derfinder basic results exploration

Project: run4-v1.0.10.

Introduction

This report is meant to help explore the results of the derfinder (Collado-Torres, Frazee, Jaffe, and Leek, 2014) package and was generated using regionReport (Collado-Torres, Jaffe, and Leek, 2014) package. While the report is rich, it is meant to just start the exploration of the results and exemplify some of the code used to do so. You will most likely need a more in-depth analysis for your specific data set.

Most plots were made with using ggplot2 (Wickham, 2009).

Code setup

#### Libraries needed

## Bioconductor
library('IRanges')
library('GenomicRanges')
library('GenomeInfoDb')

if(hg19) {
    library('biovizBase')
    library('TxDb.Hsapiens.UCSC.hg19.knownGene')
}

## CRAN
library('ggplot2')
library('grid')
library('gridExtra')
library('knitr')
library('RColorBrewer')
library('mgcv')
## Loading required package: nlme
## 
## Attaching package: 'nlme'
## 
## The following object is masked from 'package:IRanges':
## 
##     collapse
## 
## This is mgcv 1.8-3. For overview type 'help("mgcv-package")'.
## GitHub
library('derfinder')

## Working behind the scenes
# library('knitcitations')
# library('rmarkdown')
# library('knitrBootstrap')

#### Code setup

## For ggplot
tmp <- fullRegions
names(tmp) <- seq_len(length(tmp))
regions.df <- as.data.frame(tmp)
regions.df$width <- width(tmp)
rm(tmp)
nulls.df <- as.data.frame(fullNullSummary)

## Special subsets: need at least 3 points for a density plot
keepChr <- table(regions.df$seqnames) > 2
regions.df.plot <- subset(regions.df, seqnames %in% names(keepChr[keepChr]))

if(hasSig) {
    ## Keep only those sig
    regions.df.sig <- regions.df[idx.sig, ]
    keepChr <- table(regions.df.sig$seqnames) > 2
    regions.df.sig <- subset(regions.df.sig, seqnames %in% names(keepChr[keepChr]))
    
    if(nrow(regions.df.sig) > 0) {
        ## If there's any sig, keep those with finite areas
        if(hasArea) {
            finite.area.sig <- which(is.finite(regions.df.sig$area))
            
            regions.df.sig.area <- regions.df.sig[finite.area.sig, ]
            keepChr <- table(regions.df.sig.area$seqnames) > 2
            regions.df.sig.area <- subset(regions.df.sig.area, seqnames %in%
                names(keepChr[keepChr]))
            
            ## Save the info
            hasArea <- (nrow(regions.df.sig.area) > 0)
        }
    } else {
        hasSig <- hasArea <- FALSE
    }
}

## Get chr lengths
if(hg19) {
    data(hg19Ideogram, package = 'biovizBase')
    seqlengths(fullRegions) <- seqlengths(hg19Ideogram)[mapSeqlevels(names(seqlengths(fullRegions)),
         'UCSC')]
}

## Find which chrs are present in the data set
chrs <- levels(seqnames(fullRegions))

## Subset the fullCoverage data in case that a subset was used
colsubset <- optionsStats$colsubset
if(!is.null(fullCov) & !is.null(colsubset)) {
    fullCov <- lapply(fullCov, function(x) { x[, colsubset] })
}

## Get region coverage for the top regions
if(nBestRegions > 0) {
    if(packageVersion('derfinder') >= '0.0.60') {
        regionCoverage <- getRegionCoverage(fullCov = fullCov, 
            regions = fullRegions[seq_len(nBestRegions)],
            chrsStyle = chrsStyle, species = species,
            currentStyle = currentStyle, verbose = FALSE)
    } else {
        regionCoverage <- getRegionCoverage(fullCov = fullCov, 
            regions = fullRegions[seq_len(nBestRegions)],
            verbose = FALSE)
    }
    
    save(regionCoverage, file=file.path(workingDir, 'regionCoverage.Rdata'))
}

## Graphical setup: transcription database
if(hg19 & is.null(txdb)) {
    txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
} else {
    stopifnot(!is.null(txdb))
}

Quality checks

P-values

Theoretically, the p-values should be uniformly distributed between 0 and 1.

p1 <- ggplot(regions.df.plot, aes(x=pvalues, colour=seqnames)) +
    geom_line(stat='density') + xlim(0, 1) +
    labs(title='Density of p-values') + xlab('p-values') +
    scale_colour_discrete(limits=chrs) + theme(legend.title=element_blank())
p1
## Compare the pvalues
summary(fullRegions$pvalues)
##      Min.   1st Qu.    Median      Mean   3rd Qu.      Max. 
## 0.0001946 0.2162000 0.4159000 0.4413000 0.6498000 0.9990000

This is the numerical summary of the distribution of the p-values.

Q-values

summary(fullRegions$qvalues)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.1620  0.5228  0.5228  0.5381  0.5491  0.6335

This is the numerical summary of the distribution of the q-values.

qtable <- lapply(c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 0.2, 0.3, 0.4, 0.5,
    0.6, 0.7, 0.8, 0.9, 1), function(x) {
    data.frame('Cut' = x, 'Count' = sum(fullRegions$qvalues <= x))
})
qtable <- do.call(rbind, qtable)
kable(qtable, format = 'html', align = c('c', 'c'))
Cut Count
0.0001 0
0.0010 0
0.0100 0
0.0250 0
0.0500 0
0.1000 0
0.2000 2
0.3000 5
0.4000 18
0.5000 70
0.6000 2350
0.7000 2626
0.8000 2626
0.9000 2626
1.0000 2626

This table shows the number of candidate Differentially Expressed Regions (DERs) with q-value less or equal than some commonly used cutoff values.

FWER adjusted P-values

summary(fullRegions$fwer)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.0200  0.4000  0.4100  0.3925  0.4100  0.4100

This is the numerical summary of the distribution of the q-values.

fwertable <- lapply(c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 0.2, 0.3, 0.4, 0.5,
    0.6, 0.7, 0.8, 0.9, 1), function(x) {
    data.frame('Cut' = x, 'Count' = sum(fullRegions$fwer <= x))
})
fwertable <- do.call(rbind, fwertable)
kable(fwertable, format = 'html', align = c('c', 'c'))
Cut Count
0.0001 0
0.0010 0
0.0100 0
0.0250 2
0.0500 18
0.1000 37
0.2000 58
0.3000 79
0.4000 697
0.5000 2626
0.6000 2626
0.7000 2626
0.8000 2626
0.9000 2626
1.0000 2626

This table shows the number of candidate Differentially Expressed Regions (DERs) with FWER adjusted p-values less or equal than some commonly used cutoff values.

Region width

p2a <- ggplot(regions.df.plot, aes(x=log10(width), colour=seqnames)) +
    geom_line(stat='density') + labs(title='Density of region lengths') +
    xlab('Region width (log10)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
p2a

This plot shows the density of the region lengths for all regions.

Region Area

if(inf.area > 0) {
    print(paste('Dropping', inf.area, 'due to Inf values.'))
}
p3a <- ggplot(regions.df[finite.area, ], aes(x=log10(area), colour=seqnames)) +
    geom_line(stat='density') + labs(title='Density of region areas') +
    xlab('Region area (log10)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
p3a

This plot shows the density of the region areas for all regions.

Null regions: width and area

p4 <- ggplot(nulls.df, aes(x=log10(width), colour=chr)) +
    geom_line(stat='density') + labs(title='Density of null region lengths') +
    xlab('Region width (log10)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
nulls.inf <- !is.finite(nulls.df$area)
if(sum(nulls.inf) > 0) {
    print(paste('Dropping', sum(nulls.inf), 'due to Inf values.'))
}
p5 <- ggplot(nulls.df[!nulls.inf, ], aes(x=log10(area), colour=chr)) +
    geom_line(stat='density') + labs(title='Density of null region areas') +
    xlab('Region area (log10)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
grid.arrange(p4, p5)

This plot shows the density of the null region lengths and areas. There were a total of 25698 null regions.

Mean coverage

p6a <- ggplot(regions.df.plot, aes(x=log2(meanCoverage), colour=seqnames)) +
    geom_line(stat='density') + labs(title='Density of region mean coverage') +
    xlab('Region mean coverage (log2)') + scale_colour_discrete(limits=chrs) +
    theme(legend.title=element_blank())
p6a

This plot shows the density of the region mean coverage for all regions.

Mean coverage vs fold change

The following plots are MA-style plots comparing each group vs the first one. The mean coverage is calculated using only two groups at a time and is weighted according to the number of samples on each group. Note that the mean coverage and fold change as calculated here do not taking into account the library sizes.

These plots are only shown when there are two or more groups. A total of 4 plot(s) were made.

for(j in grep('log2FoldChange', colnames(values(fullRegions)))) {
    ## Identify the groups
    groups <- strsplit(gsub('log2FoldChange', '',
        colnames(values(fullRegions))[j]), 'vs')[[1]]
    
    ## Calculate the mean coverage only using the 2 groups in question
    j.mean <- which(colnames(values(fullRegions)) %in% paste0('mean', groups))
    groups.n <- sapply(groups, function(x) { sum(optionsStats$groupInfo == x) })
    ma.mean.mat <- as.matrix(values(fullRegions)[, j.mean])
    ## Weighted means
    ma.mean <- drop(ma.mean.mat %*% groups.n) / sum(groups.n) +
        optionsStats$scalefac
    ma.fold2 <- drop(log2(ma.mean.mat + optionsStats$scalefac) %*% c(1, -1))
    
    ma <- data.frame(mean=ma.mean, log2FoldChange=ma.fold2)
    ma2 <- ma[is.finite(ma$log2FoldChange), ]
    fold.mean <- data.frame(foldMean=mean(ma2$log2FoldChange, na.rm=TRUE))
    
    p.ma <- ggplot(ma, aes(x=log2(mean), y=log2FoldChange)) +
        geom_point(size=1.5, alpha=1/5) + 
        ylab("Fold Change [log2(x + sf)]\nRed dashed line at mean; blue line is GAM fit: y ~ s(x, bs = 'cs')") +
        xlab(paste('Mean coverage [log2(x + sf)] using only groups', groups[1], 'and',
            groups[2])) + labs(title=paste('MA style plot:', groups[1], 'vs ', 
            groups[2])) + geom_hline(aes(yintercept=foldMean), data=fold.mean, 
            colour='#990000', linetype='dashed') +
        geom_smooth(aes(y=log2FoldChange, x=log2(mean)), data=subset(ma2,
            mean > 0), method = 'gam', formula = y ~ s(x, bs = 'cs'))
    print(p.ma)
}

Genomic overview

The following plots were made using ggbio (Yin, Cook, and Lawrence, 2012) which in turn uses ggplot2 (Wickham, 2009). For more details check plotOverview in derfinder (Collado-Torres, Frazee, Jaffe, and Leek, 2014).

Q-values

plotOverview(regions=fullRegions, type='qval', base_size=overviewParams$base_size, areaRel=overviewParams$areaRel, legend.position=c(0.97, 0.12))

This plot shows the genomic locations of the candidate regions found in the analysis. The significant regions (q-value less than 0.1) are highlighted and the area of the regions is shown on top of each chromosome. Note that the area is in a relative scale.

Annotation

plotOverview(regions=fullRegions, annotation=fullRegions, type='annotation', base_size=overviewParams$base_size, areaRel=overviewParams$areaRel, legend.position=c(0.97, 0.12))

This genomic overview plot shows the annotation region type for the candidate regions. Note that the regions are shown only if the annotation information is available. Below is a table of the actual number of results per annotation region type.

annoReg <- table(fullRegions$region, useNA='always')
annoReg.df <- data.frame(Region=names(annoReg), Count=as.vector(annoReg))
kable(annoReg.df, format = 'html', align=rep('c', 3))
Region Count
upstream 630
promoter 6
overlaps 5' 0
inside 636
overlaps 3' 6
close to 3' 2
downstream 797
covers 0
NA 549

Annotation (significant)

This genomic overview plot shows the annotation region type for the candidate regions that have a q-value less than 0.1. Note that the regions are shown only if the annotation information is available. Plot skipped because there are no significant regions.

Best regions

Plots

Below are the plots for the top 100 candidate DERs as ranked by area. For each plot, annotation is shown if the candidate DER has a minimum overlap of 20 base pairs with annotation information (strand specific). If present, exons are collapsed and shown in blue. Introns are shown in light blue. The title of each plot is composed of the name of the nearest annotation element, the distance to it, and whether the region of the genome the DER falls into; all three pieces of information are based on bumphunter::annotateNearest().

The annotation depends on the Genomic State used. For details on which one was used for this report check the call to mergeResults in the reproducibility details.

if(nBestRegions > 0) {
    plotRegionCoverage(regions = fullRegions, regionCoverage = regionCoverage,
        groupInfo = optionsStats$groupInfo, nearestAnnotation = regions.df,
        annotatedRegions = fullAnnotatedRegions, 
        whichRegions = seq_len(min(nBestRegions, length(fullRegions))),
        colors = NULL, scalefac = optionsStats$scalefac, ask = FALSE, 
        verbose = TRUE, txdb = txdb) 
}
## 2014-11-24 16:53:39 plotRegionCoverage: extracting Tx info
## 2014-11-24 16:53:43 plotRegionCoverage: getting Tx plot info

Below is a table summarizing the number of genomic states per region.

info <- do.call(rbind, lapply(fullAnnotatedRegions$countTable, function(x) { data.frame(table(x)) }))
colnames(info) <- c('Number of Overlapping States', 'Frequency')
info$State <- gsub('\\..*', '', rownames(info))
rownames(info) <- NULL
kable(info, format = 'html', align=rep('c', 4))
Number of Overlapping States Frequency State
0 2277 exon
1 344 exon
2 5 exon
0 1161 intragenic
1 1465 intragenic
0 2298 intron
1 309 intron
2 18 intron
3 1 intron

Region information

Below is an interactive table with the top 500 regions (out of 2626) as ranked by area. Inf and -Inf are shown as 1e100 and -1e100 respectively.

topArea <- head(regions.df, nBestRegions * 5)
topArea <- data.frame('areaRank'=order(topArea$area, decreasing=TRUE), topArea)
## Clean up -Inf, Inf if present
## More details at https://github.com/ramnathv/rCharts/issues/259
replaceInf <- function(df, colsubset=seq_len(ncol(df))) {
    for(i in colsubset) {
        inf.idx <- !is.finite(df[, i])
        if(any(inf.idx)) {
            inf.sign <- sign(df[inf.idx, i])
            df[inf.idx, i] <- inf.sign * 1e100
        }
    }
    return(df)
}
topArea <- replaceInf(topArea, grep('log2FoldChange|value|area',
    colnames(topArea)))

## Make the table
kable(topArea, format = 'html', table.attr='id="regions_table"')
areaRank seqnames start end width strand value area indexStart indexEnd cluster clusterL meanCoverage meanh1 meanh1.bmp4 meanh1.mesendoderm meanh1.msc meanh1.npc log2FoldChangeh1.bmp4vsh1 log2FoldChangeh1.mesendodermvsh1 log2FoldChangeh1.mscvsh1 log2FoldChangeh1.npcvsh1 pvalues significant qvalues significantQval name annotation description region distance subregion insidedistance exonnumber nexons UTR annoStrand geneL codingL fwer significantFWER
1 chr6 114743644 114747838 4195
45.68984 191668.889 12440329 12444523 23 5713 10109.898 2.678570e+04 1.342706e+01 2.374911e+04 2.648391e-01 9.871275e-01 -1.096210e+01 -1.735892e-01 -1.662599e+01 -1.472787e+01 0.0001946 TRUE 0.1619899 FALSE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 80104 NA NA NA 5 NA
286790 5588 0.02 TRUE
2 chr3 54669829 54673866 4038
41.67070 168266.300 7023070 7027107 12 7966 15337.757 4.698365e+04 6.062927e+01 2.957462e+04 7.341134e+00 6.253987e+01 -9.597929e+00 -6.677992e-01 -1.264387e+01 -9.553167e+00 0.0001946 TRUE 0.1619899 FALSE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.02 TRUE
3 chr20 38898581 38902126 3546
39.82845 141231.673 4366273 4369818 10 5561 6048.769 2.142623e+04 3.133108e+00 8.814309e+03 4.272420e-02 1.281726e-01 -1.273950e+01 -1.281459e+00 -1.893589e+01 -1.735093e+01 0.0005837 TRUE 0.2721431 FALSE MAFB NM_005461 NP_005452 downstream downstream 415750 NA NA NA 1 NA
3359 971 0.03 TRUE
4 chr16 65263750 65267086 3337
42.23135 140926.020 8136502 8139838 11 5144 7540.379 2.005473e+04 8.788583e+00 1.763629e+04 8.020677e-01 1.284987e+00 -1.115602e+01 -1.853958e-01 -1.460986e+01 -1.392990e+01 0.0006615 TRUE 0.2721431 FALSE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.04 TRUE
5 chr12 59717007 59720598 3592
34.94620 125526.749 8411590 8415181 15 5621 4262.394 1.545390e+04 3.752366e+00 5.850282e+03 2.000557e+00 2.040785e+00 -1.200788e+01 -1.401392e+00 -1.291528e+01 -1.288656e+01 0.0008172 TRUE 0.2721431 FALSE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 269223 NA NA NA 6 NA
193814 74877 0.04 TRUE
6 chr7 83092153 83094655 2503
42.92514 107441.634 9197710 9200212 13 5357 7854.302 2.115698e+04 6.093288e+00 1.810757e+04 2.622853e-01 6.052737e-01 -1.176163e+01 -2.245410e-01 -1.629964e+01 -1.509319e+01 0.0017510 TRUE 0.3304594 FALSE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 183824 inside intron -1143 4 17 inside transcription region
285257 280956 0.04 TRUE
7 chr7 83089299 83092109 2811
37.18137 104516.823 9194856 9197666 13 5357 5584.961 1.480288e+04 4.870509e+00 1.311620e+04 1.045891e-01 7.545358e-01 -1.156952e+01 -1.745281e-01 -1.711079e+01 -1.425993e+01 0.0018289 TRUE 0.3304594 FALSE SEMA3E NM_001178129 NM_012431 NP_001171600 NP_036563 XM_006716187 XP_006716250 inside intron inside 186370 inside intron -3689 4 17 inside transcription region
285257 280956 0.04 TRUE
8 chr13 56154486 56157442 2957
35.27968 104322.026 4513244 4516200 12 5555 4344.186 1.714812e+04 9.905309e-01 4.571339e+03 2.561718e-01 2.220156e-01 -1.407949e+01 -1.907362e+00 -1.603058e+01 -1.623703e+01 0.0018289 TRUE 0.3304594 FALSE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.04 TRUE
9 chrX 91355281 91358419 3139
32.82028 103022.864 6902562 6905700 13 5524 3829.454 1.235957e+04 2.412663e+01 6.761252e+03 7.883084e-01 1.528353e+00 -9.000787e+00 -8.702668e-01 -1.393651e+01 -1.298136e+01 0.0018289 TRUE 0.3304594 FALSE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 264821 inside intron 97955 3 7 inside transcription region
787768 632811 0.04 TRUE
10 chr1 223199730 223201702 1973
47.92945 94564.806 28748920 28750892 40 5414 15059.155 2.933128e+04 1.722892e+02 4.578983e+04 6.398885e-01 1.740497e+00 -7.411464e+00 6.425871e-01 -1.548426e+01 -1.404065e+01 0.0019845 TRUE 0.3304594 FALSE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 211299 NA NA NA 10 NA
190906 63148 0.04 TRUE
11 chr4 180089193 180091351 2159
39.48598 85250.221 15658562 15660720 49 3684 5911.772 1.752941e+04 6.785549e-01 1.202754e+04 0.000000e+00 1.228578e+00 -1.465695e+01 -5.434361e-01 -1.000000e+100 -1.380050e+01 0.0025293 TRUE 0.3617775 FALSE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.04 TRUE
12 chr13 51747208 51748903 1696
49.24998 83527.969 3858043 3859738 6 5837 13266.503 3.402886e+04 2.677182e+00 3.229929e+04 3.573113e-01 1.329304e+00 -1.363376e+01 -7.525640e-02 -1.653922e+01 -1.464380e+01 0.0026071 TRUE 0.3617775 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.04 TRUE
13 chr1 223197943 223199471 1529
48.97254 74879.010 28747133 28748661 40 5414 19662.167 3.814555e+04 2.237462e+02 5.993613e+04 2.378025e+00 3.036952e+00 -7.413507e+00 6.519113e-01 -1.396946e+01 -1.361660e+01 0.0031519 TRUE 0.3851760 FALSE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 209512 NA NA NA 10 NA
190906 63148 0.04 TRUE
14 chr4 180087668 180089098 1431
50.33258 72025.928 15657037 15658467 49 3684 13586.016 3.980034e+04 4.162823e+00 2.812396e+04 9.175402e-01 7.058001e-01 -1.322293e+01 -5.009809e-01 -1.540465e+01 -1.578316e+01 0.0035410 TRUE 0.3851760 FALSE LINC01098 NM_001085490 NR_028342 NA NA 0 NA NA NA 6 NA
0 0 0.04 TRUE
15 chr3 112139899 112141745 1847
38.46586 71046.442 10614296 10616142 20 4830 5863.223 2.149578e+04 1.684732e+01 7.803325e+03 5.468330e-02 1.093665e-01 -1.031732e+01 -1.461892e+00 -1.858452e+01 -1.758452e+01 0.0037745 TRUE 0.3851760 FALSE BTLA NM_001085357 NM_181780 NP_001078826 NP_861445 XM_005247136 XP_005247193 downstream downstream 76663 NA NA NA 5 NA
35595 33250 0.04 TRUE
16 chrY 5811789 5814021 2233
31.61959 70606.549 689344 691576 4 4710 3079.194 9.467293e+03 7.689207e-01 5.926987e+03 4.523060e-02 8.772951e-01 -1.358783e+01 -6.756530e-01 -1.767529e+01 -1.339760e+01 0.0038523 TRUE 0.3851760 FALSE PCDH11Y NM_001278619 NM_032971 NM_032972 NM_032973 NP_001265548 NP_116753 NP_116754 NP_116755 downstream downstream 887658 NA NA NA 5 NA
686133 681118 0.04 TRUE
17 chr16 65267122 65268893 1772
37.48242 66418.857 8139874 8141645 11 5144 5228.242 1.329795e+04 2.907449e+00 1.284018e+04 0.000000e+00 1.709932e-01 -1.215916e+01 -5.053880e-02 -1.000000e+100 -1.624691e+01 0.0041636 TRUE 0.3851760 FALSE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.04 TRUE
18 chrX 113703661 113705255 1595
41.54784 66268.803 9176606 9178200 24 5710 7736.595 2.855289e+04 8.850784e+00 1.011912e+04 8.833856e-01 1.234796e+00 -1.165554e+01 -1.496554e+00 -1.498023e+01 -1.449708e+01 0.0041636 TRUE 0.3851760 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 113296 NA NA NA 6 NA
326073 180632 0.04 TRUE
19 chr9 99977864 99979500 1637
34.99459 57286.141 9815632 9817268 16 5375 4574.797 1.565454e+04 9.132865e+00 7.206888e+03 7.403787e-01 2.683873e+00 -1.074323e+01 -1.119133e+00 -1.436796e+01 -1.250998e+01 0.0057979 TRUE 0.4211738 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.06 FALSE
20 chr6 114747858 114749088 1231
45.29144 55753.764 12444543 12445773 23 5713 11443.697 3.021517e+04 8.368806e+00 2.699453e+04 0.000000e+00 4.069862e-01 -1.181796e+01 -1.626060e-01 -1.000000e+100 -1.617993e+01 0.0060314 TRUE 0.4211738 FALSE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 84318 NA NA NA 5 NA
286790 5588 0.06 FALSE
21 chr1 223201905 223203189 1285
43.07772 55354.873 28751095 28752379 40 5414 10091.384 2.011751e+04 1.087938e+02 3.022980e+04 7.817121e-01 3.929960e-02 -7.530712e+00 5.875199e-01 -1.465145e+01 -1.896551e+01 0.0061092 TRUE 0.4211738 FALSE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 213474 NA NA NA 10 NA
190906 63148 0.06 FALSE
22 chr13 56152333 56153739 1407
39.32726 55333.456 4511144 4512550 12 5555 6305.571 2.477762e+04 4.182303e+00 6.744273e+03 5.383795e-01 1.245913e+00 -1.253245e+01 -1.877303e+00 -1.549005e+01 -1.427955e+01 0.0061092 TRUE 0.4211738 FALSE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.06 FALSE
23 chr3 112137303 112138546 1244
44.10737 54869.570 10611700 10612943 20 4830 9772.442 3.583162e+04 1.866712e+02 1.284379e+04 4.059490e-02 8.118970e-02 -7.584590e+00 -1.480162e+00 -1.975151e+01 -1.875151e+01 0.0062648 TRUE 0.4211738 FALSE BTLA NM_001085357 NM_181780 NP_001078826 NP_861445 XM_005247136 XP_005247193 downstream downstream 79862 NA NA NA 5 NA
35595 33250 0.06 FALSE
24 chr3 46622622 46623949 1328
39.57793 52559.495 5033626 5034953 11 4701 7461.466 2.022045e+04 1.882530e+00 1.708480e+04 1.901355e-01 0.000000e+00 -1.339085e+01 -2.431015e-01 -1.669843e+01 -1.000000e+100 0.0064205 TRUE 0.4211738 FALSE TDGF1 NM_001174136 NM_003212 NP_001167607 NP_003203 inside exon inside 3546 inside exon 0 6 6 overlaps 3'UTR
4876 3280 0.06 FALSE
25 chr20 12735336 12736818 1483
34.09492 50562.760 1447212 1448694 3 8409 3925.830 1.499198e+04 2.568105e+00 4.633005e+03 2.724208e-01 1.322320e+00 -1.251120e+01 -1.694171e+00 -1.574799e+01 -1.346883e+01 0.0064983 TRUE 0.4211738 FALSE SPTLC3 NM_018327 NP_060797 XR_244218 upstream upstream 252809 NA NA NA 2 NA
41189 40087 0.06 FALSE
26 chr2 189876354 189877472 1119
44.06981 49314.116 20142419 20143537 41 27987 26591.306 2.190348e+00 2.050964e+04 8.570152e-01 1.124416e+05 2.212243e+00 1.319285e+01 -1.353768e+00 1.564766e+01 1.434950e-02 0.0065761 TRUE 0.4211738 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 37255 inside exon 0 51 51 overlaps 3'UTR
38373 37284 0.06 FALSE
27 chr19 54337445 54339006 1562
30.85261 48191.775 14738671 14740232 10 5816 3182.019 1.242850e+04 3.054770e+01 3.450286e+03 2.909731e-01 4.705506e-01 -8.668373e+00 -1.848864e+00 -1.538241e+01 -1.468894e+01 0.0071209 TRUE 0.4218938 FALSE NLRP12 NM_001277126 NM_001277129 NM_033297 NM_144687 NP_001264055 NP_001264058 NP_653288 upstream upstream 9788 NA NA NA 10 NA
30802 30125 0.06 FALSE
28 chr14 101200486 101201471 986
45.83510 45193.406 9362988 9363973 17 8209 29749.266 1.824544e+01 6.052941e+01 1.219270e+01 1.716522e+03 1.469388e+05 1.730101e+00 -5.815183e-01 6.555809e+00 1.297539e+01 0.0073544 TRUE 0.4218938 FALSE DLK1 NM_001032997 NM_003836 NP_003827 overlaps 3' overlaps 3' 7284 inside exon 0 5 5 overlaps 3'UTR
8265 7827 0.06 FALSE
29 chr12 14859835 14861151 1317
32.73786 43115.767 2902857 2904173 11 5086 3501.021 1.070951e+04 4.726272e+00 6.786526e+03 2.385725e+00 1.955581e+00 -1.114590e+01 -6.581476e-01 -1.213218e+01 -1.241901e+01 0.0077435 TRUE 0.4218938 FALSE GUCY2C NM_004963 NP_004954 upstream upstream 10316 NA NA NA 27 NA
83951 83331 0.07 FALSE
30 chrX 91358884 91360146 1263
33.46858 42270.822 6906165 6907427 13 5524 3619.294 1.097615e+04 1.079810e+01 7.109364e+03 0.000000e+00 1.599367e-01 -9.989379e+00 -6.265796e-01 -1.000000e+100 -1.606651e+01 0.0081326 TRUE 0.4218938 FALSE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 268424 inside intron 96228 3 7 inside transcription region
787768 632811 0.07 FALSE
31 chr2 77319847 77321265 1419
29.68853 42128.030 8907400 8908818 21 5816 2836.073 1.167112e+04 1.234109e+01 2.495767e+03 7.117690e-02 1.067653e+00 -9.885258e+00 -2.225388e+00 -1.732310e+01 -1.341621e+01 0.0081326 TRUE 0.4218938 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 428237 inside intron 343805 4 4 inside transcription region
774652 772976 0.07 FALSE
32 chr2 77316359 77317685 1327
31.39538 41661.673 8903912 8905238 21 5816 3309.266 1.332558e+04 7.209495e+00 3.212057e+03 0.000000e+00 1.484175e+00 -1.085201e+01 -2.052629e+00 -1.000000e+100 -1.313225e+01 0.0081326 TRUE 0.4218938 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 431817 inside intron 340317 4 4 inside transcription region
774652 772976 0.07 FALSE
33 chr13 51745692 51746733 1042
38.03860 39636.224 3856527 3857568 6 5837 6614.912 1.616952e+04 1.647793e+00 1.689971e+04 4.846450e-02 3.634837e+00 -1.326045e+01 6.372130e-02 -1.834792e+01 -1.211910e+01 0.0089109 TRUE 0.4218938 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.08 FALSE
34 chr3 54668711 54669826 1116
35.23096 39317.753 7021952 7023067 12 7966 4121.927 1.493856e+04 8.009857e+00 5.662573e+03 1.357527e-01 3.570789e-01 -1.086498e+01 -1.399511e+00 -1.674770e+01 -1.535244e+01 0.0091443 TRUE 0.4218938 FALSE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.08 FALSE
35 chr12 14858399 14859410 1012
38.44192 38903.228 2901421 2902432 11 5086 5582.549 1.639089e+04 8.333498e+00 1.151053e+04 6.986166e-01 2.295454e+00 -1.094168e+01 -5.099407e-01 -1.451803e+01 -1.280183e+01 0.0094556 TRUE 0.4218938 FALSE GUCY2C NM_004963 NP_004954 upstream upstream 8880 NA NA NA 27 NA
83951 83331 0.09 FALSE
36 chr20 12739259 12740239 981
38.39673 37667.188 1451135 1452115 3 8409 6041.663 2.236485e+04 1.065596e+01 7.831519e+03 0.000000e+00 1.286952e+00 -1.103536e+01 -1.513869e+00 -1.000000e+100 -1.408499e+01 0.0096113 TRUE 0.4218938 FALSE SPTLC3 NM_018327 NP_060797 XR_244218 upstream upstream 249388 NA NA NA 2 NA
41189 40087 0.09 FALSE
37 chr2 77318093 77319353 1261
29.76274 37530.815 8905646 8906906 21 5816 2904.682 1.173164e+04 1.194528e+01 2.777663e+03 1.081285e+00 1.081285e+00 -9.939748e+00 -2.078461e+00 -1.340537e+01 -1.340537e+01 0.0097669 TRUE 0.4218938 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 430149 inside intron 342051 4 4 inside transcription region
774652 772976 0.10 FALSE
38 chr3 54666148 54667077 930
39.64343 36868.391 7019389 7020318 12 7966 6957.291 2.041209e+04 7.511290e+00 1.436563e+04 0.000000e+00 1.225269e+00 -1.140808e+01 -5.068028e-01 -1.000000e+100 -1.402404e+01 0.0103895 TRUE 0.4218938 FALSE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.12 FALSE
39 chr20 12736902 12737934 1033
35.22387 36386.255 1448778 1449810 3 8409 4825.570 1.837984e+04 2.540174e+00 5.742647e+03 3.422072e-01 2.480155e+00 -1.282091e+01 -1.678337e+00 -1.571289e+01 -1.285541e+01 0.0106230 TRUE 0.4218938 FALSE SPTLC3 NM_018327 NP_060797 XR_244218 upstream upstream 251693 NA NA NA 2 NA
41189 40087 0.13 FALSE
40 chr20 38902176 38902851 676
53.31317 36039.700 4369868 4370543 10 5561 19439.474 6.892029e+04 1.219157e+01 2.826332e+04 6.723373e-01 8.964497e-01 -1.246483e+01 -1.285998e+00 -1.664538e+01 -1.623035e+01 0.0106230 TRUE 0.4218938 FALSE MAFB NM_005461 NP_005452 downstream downstream 415025 NA NA NA 1 NA
3359 971 0.13 FALSE
41 chr13 43443665 43444574 910
39.38160 35837.254 2781854 2782763 5 6717 5911.284 1.951382e+04 1.873077e+00 1.004017e+04 0.000000e+00 5.549451e-01 -1.334680e+01 -9.587115e-01 -1.000000e+100 -1.510179e+01 0.0107008 TRUE 0.4218938 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 121833 NA NA NA 13 NA
105883 103915 0.13 FALSE
42 chr13 43445103 43446160 1058
33.71477 35670.231 2783292 2784349 5 6717 3674.164 1.183978e+04 1.915879e+00 6.527310e+03 9.546310e-02 1.713611e+00 -1.259335e+01 -8.590824e-01 -1.692027e+01 -1.275432e+01 0.0107786 TRUE 0.4218938 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 120247 NA NA NA 13 NA
105883 103915 0.13 FALSE
43 chr3 112138937 112139692 756
45.27525 34228.091 10613334 10614089 20 4830 10803.498 3.925196e+04 4.507077e+01 1.471753e+04 2.137566e+00 8.015873e-01 -9.766357e+00 -1.415229e+00 -1.416451e+01 -1.557955e+01 0.0111677 TRUE 0.4218938 FALSE BTLA NM_001085357 NM_181780 NP_001078826 NP_861445 XM_005247136 XP_005247193 downstream downstream 78716 NA NA NA 5 NA
35595 33250 0.14 FALSE
44 chr16 13446582 13447737 1156
29.50583 34108.734 2740906 2742061 5 5109 2593.724 9.482847e+03 2.121540e+00 3.482998e+03 0.000000e+00 6.552768e-01 -1.212599e+01 -1.444991e+00 -1.000000e+100 -1.382093e+01 0.0113234 TRUE 0.4218938 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 451105 NA NA NA 5 NA
338796 333344 0.15 FALSE
45 chrX 113702592 113703534 943
35.67699 33643.405 9175537 9176479 24 5710 4351.814 1.649177e+04 1.927890e+00 5.265227e+03 0.000000e+00 1.505832e-01 -1.306244e+01 -1.647178e+00 -1.000000e+100 -1.674083e+01 0.0114012 TRUE 0.4218938 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 115017 NA NA NA 6 NA
326073 180632 0.15 FALSE
46 chrX 113701754 113702573 820
39.37737 32289.446 9174699 9175518 24 5710 6245.835 2.319275e+04 4.387805e+00 8.031000e+03 2.463415e-01 7.884146e-01 -1.236789e+01 -1.530023e+00 -1.652266e+01 -1.484436e+01 0.0118682 TRUE 0.4296254 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 115978 NA NA NA 6 NA
326073 180632 0.15 FALSE
47 chr12 59720981 59721796 816
36.82290 30047.488 8415564 8416379 15 5621 4784.554 1.656842e+04 9.901961e-01 7.350127e+03 6.188730e-02 3.173407e+00 -1.403036e+01 -1.172595e+00 -1.803036e+01 -1.235012e+01 0.0138138 TRUE 0.4629966 FALSE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 268025 NA NA NA 6 NA
193814 74877 0.20 FALSE
48 chr9 96110667 96111632 966
29.82942 28815.223 8985901 8986866 14 5407 2528.552 9.300250e+03 5.745342e-01 3.341883e+03 0.000000e+00 5.227740e-02 -1.398259e+01 -1.476608e+00 -1.000000e+100 -1.744072e+01 0.0145920 TRUE 0.4629966 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 promoter promoter 1971 NA NA NA 5 NA
28215 17555 0.20 FALSE
49 chr12 91501895 91502777 883
32.04780 28298.212 10932604 10933486 28 3324 9140.618 0.000000e+00 1.961170e+04 2.978482e-01 2.606243e+04 2.867101e+01 1.000000e+100 1.000000e+100 1.000000e+100 1.000000e+100 0.0146698 TRUE 0.4629966 FALSE LUM NM_002345 NP_002336 inside exon inside 2765 inside exon 0 2 3 overlaps 5' UTR
8310 4814 0.20 FALSE
50 chr10 53796050 53796872 823
33.83028 27842.321 5493670 5494492 7 5594 3959.730 1.314923e+04 8.654314e+00 6.635670e+03 1.534022e+00 3.558931e+00 -1.056927e+01 -9.866648e-01 -1.306537e+01 -1.185125e+01 0.0149033 TRUE 0.4629966 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 961816 inside intron 17372 6 18 inside transcription region
1223876 1219309 0.20 FALSE
51 chr8 42032754 42033669 916
30.05498 27530.365 4917787 4918702 7 17976 10880.047 1.283843e+02 7.289629e+01 7.078057e+01 5.403957e+04 8.859771e+01 -8.165513e-01 -8.590433e-01 8.717404e+00 -5.351273e-01 0.0150590 TRUE 0.4629966 FALSE PLAT NM_000930 NM_000931 NM_033011 NP_000921 NP_127509 inside exon inside 31525 inside exon 0 11 11 overlaps 3'UTR
32958 17192 0.20 FALSE
52 chrX 113705708 113706402 695
39.53324 27475.602 9178653 9179347 24 5710 6092.398 2.344471e+04 2.111511e+00 7.014391e+03 0.000000e+00 7.776978e-01 -1.343870e+01 -1.740873e+00 -1.000000e+100 -1.487969e+01 0.0150590 TRUE 0.4629966 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 112149 NA NA NA 6 NA
326073 180632 0.20 FALSE
53 chr13 51744860 51745575 716
37.94642 27169.636 3855695 3856410 6 5837 5121.421 1.273524e+04 2.115922e-01 1.287137e+04 1.410615e-01 1.410615e-01 -1.587718e+01 1.533860e-02 -1.646214e+01 -1.646214e+01 0.0152146 TRUE 0.4629966 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.20 FALSE
54 chr19 54339110 54339902 793
33.86311 26853.447 14740336 14741128 10 5816 4576.323 1.798254e+04 3.564817e+01 4.863298e+03 0.000000e+00 1.273644e-01 -8.978553e+00 -1.886590e+00 -1.000000e+100 -1.710727e+01 0.0152924 TRUE 0.4629966 FALSE NLRP12 NM_001277126 NM_001277129 NM_033297 NM_144687 NP_001264055 NP_001264058 NP_653288 upstream upstream 11453 NA NA NA 10 NA
30802 30125 0.20 FALSE
55 chrY 5810169 5811120 952
28.17944 26826.827 687724 688675 4 4710 2124.968 6.470268e+03 0.000000e+00 4.154574e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -6.391250e-01 -1.000000e+100 -1.000000e+100 0.0152924 TRUE 0.4629966 FALSE PCDH11Y NM_001278619 NM_032971 NM_032972 NM_032973 NP_001265548 NP_116753 NP_116754 NP_116755 downstream downstream 886038 NA NA NA 5 NA
686133 681118 0.20 FALSE
56 chr5 126177401 126178273 873
29.68796 25917.586 11958598 11959470 23 5984 2763.606 1.099494e+04 5.181558e+00 2.815971e+03 2.302405e-01 1.709622e+00 -1.105117e+01 -1.965135e+00 -1.554334e+01 -1.265087e+01 0.0159928 TRUE 0.4636263 FALSE LMNB1 NM_001198557 NM_005573 NP_001185486 NP_005564 downstream downstream 65086 NA NA NA 11 NA
60397 58755 0.20 FALSE
57 chr6 126025296 126026112 817
31.67800 25880.928 13418336 13419152 35 5548 3738.113 1.155828e+04 1.942228e+01 7.109034e+03 6.150551e-01 3.214198e+00 -9.216999e+00 -7.012014e-01 -1.419785e+01 -1.181218e+01 0.0159928 TRUE 0.4636263 FALSE RP1-293L8.2 NR_038906 NA NA 0 NA NA NA 4 NA
0 0 0.20 FALSE
58 chr19 54339935 54340563 629
39.95045 25128.831 14741161 14741789 10 5816 7873.913 3.154147e+04 5.725358e+01 7.770436e+03 8.028620e-02 3.211447e-01 -9.105669e+00 -2.021183e+00 -1.858367e+01 -1.658367e+01 0.0161485 TRUE 0.4636263 FALSE NLRP12 NM_001277126 NM_001277129 NM_033297 NM_144687 NP_001264055 NP_001264058 NP_653288 upstream upstream 12278 NA NA NA 10 NA
30802 30125 0.20 FALSE
59 chr12 91497324 91498096 773
31.54829 24386.830 10928145 10928917 27 773 8802.313 0.000000e+00 1.951036e+04 6.934023e-01 2.447242e+04 2.808926e+01 1.000000e+100 1.000000e+100 1.000000e+100 1.000000e+100 0.0171602 TRUE 0.4769408 FALSE LUM NM_002345 NP_002336 inside exon inside 7446 inside exon 0 3 3 overlaps 3'UTR
8310 4814 0.21 FALSE
60 chr4 88852622 88853235 614
38.84404 23850.238 8287102 8287715 19 5968 7636.154 2.205431e+04 9.840472e+01 1.602698e+04 8.224760e-02 9.869707e-01 -7.808117e+00 -4.605580e-01 -1.803266e+01 -1.444769e+01 0.0173158 TRUE 0.4769408 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 43567 NA NA NA 7 NA
7761 6000 0.21 FALSE
61 chr4 1160721 1161444 724
32.59108 23595.940 489693 490416 1 5842 12587.806 5.971064e+01 2.053736e+02 5.566298e+00 6.255169e+04 1.166851e+02 1.782191e+00 -3.423198e+00 1.003285e+01 9.665603e-01 0.0174715 TRUE 0.4769408 FALSE SPON2 NM_001128325 NM_001199021 NM_012445 NP_001121797 NP_001185950 NP_036577 overlaps 3' overlaps 3' 3830 inside exon 0 2 2 3'UTR
4551 887 0.21 FALSE
62 chr6 132240585 132241372 788
29.24542 23045.394 13987988 13988775 42 1116 2380.382 8.627980e+03 2.563452e-01 3.273673e+03 0.000000e+00 0.000000e+00 -1.503865e+01 -1.398113e+00 -1.000000e+100 -1.000000e+100 0.0184054 TRUE 0.4905980 FALSE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 111429 NA NA NA 25 NA
87139 82475 0.21 FALSE
63 chr13 43442807 43443357 551
41.49560 22864.078 2781159 2781709 5 6717 7296.915 2.398613e+04 5.190563e+00 1.249146e+04 1.146098e+00 6.406534e-01 -1.217402e+01 -9.412582e-01 -1.435318e+01 -1.519230e+01 0.0185610 TRUE 0.4905980 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 123050 NA NA NA 13 NA
105883 103915 0.21 FALSE
64 chr9 96112820 96113451 632
35.62526 22515.166 8988054 8988685 14 5407 4901.347 1.776297e+04 5.929589e+00 6.732492e+03 1.598101e+00 3.746835e+00 -1.154865e+01 -1.399660e+00 -1.344023e+01 -1.221091e+01 0.0192614 TRUE 0.4970776 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 4124 NA NA NA 5 NA
28215 17555 0.23 FALSE
65 chr20 38902878 38903359 482
46.57342 22448.390 4370570 4371051 10 5561 11972.730 4.252558e+04 1.140145e+01 1.732449e+04 1.862033e+00 3.143154e-01 -1.186490e+01 -1.295518e+00 -1.447916e+01 -1.704576e+01 0.0194949 TRUE 0.4970776 FALSE MAFB NM_005461 NP_005452 downstream downstream 414517 NA NA NA 1 NA
3359 971 0.25 FALSE
66 chr2 217540128 217540942 815
26.74077 21793.729 23441075 23441889 55 6953 5998.566 6.548098e+01 9.984825e+03 9.565644e+00 1.171249e+04 8.220471e+03 7.252517e+00 -2.775142e+00 7.482756e+00 6.972001e+00 0.0202732 TRUE 0.4970776 FALSE IGFBP5 NM_000599 NP_000590 inside exon inside 19330 inside exon 0 4 4 3'UTR
23444 18024 0.25 FALSE
67 chr5 126175555 126176211 657
33.10154 21747.713 11956752 11957408 23 5984 4099.549 1.630220e+04 7.638508e+00 4.183302e+03 4.794521e-01 4.125571e+00 -1.105949e+01 -1.962353e+00 -1.505332e+01 -1.194819e+01 0.0202732 TRUE 0.4970776 FALSE LMNB1 NM_001198557 NM_005573 NP_001185486 NP_005564 downstream downstream 63240 NA NA NA 11 NA
60397 58755 0.25 FALSE
68 chr2 67566474 67567099 626
34.05405 21317.836 7291286 7291911 17 8129 4319.711 1.942472e+04 0.000000e+00 2.173832e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -3.159582e+00 -1.000000e+100 -1.000000e+100 0.0206623 TRUE 0.4970776 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 57343 NA NA NA 6 NA
13091 12589 0.25 FALSE
69 chrX 113706467 113706940 474
44.92992 21296.784 9179412 9179885 24 5710 9643.632 3.546896e+04 2.401899e+00 1.274563e+04 8.143460e-01 3.586498e-01 -1.385009e+01 -1.476554e+00 -1.541056e+01 -1.659362e+01 0.0206623 TRUE 0.4970776 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 111611 NA NA NA 6 NA
326073 180632 0.25 FALSE
70 chr16 3064718 3065393 676
31.18130 21078.559 1323244 1323919 1 3440 8697.893 1.987659e+04 1.292044e+04 1.039832e+04 1.267012e+00 2.928476e+02 -6.214153e-01 -9.347202e-01 -1.393735e+01 -6.084776e+00 0.0208958 TRUE 0.4970776 FALSE CLDN6 NM_021195 NP_067018 inside exon inside 2795 inside exon 0 2 2 overlaps 3'UTR
3475 662 0.26 FALSE
71 chr20 12738097 12738691 595
34.77718 20692.424 1449973 1450567 3 8409 4168.758 1.652513e+04 1.582353e+00 4.315570e+03 0.000000e+00 1.512605e+00 -1.335030e+01 -1.937039e+00 -1.000000e+100 -1.341534e+01 0.0215962 TRUE 0.5065037 FALSE SPTLC3 NM_018327 NP_060797 XR_244218 upstream upstream 250936 NA NA NA 2 NA
41189 40087 0.27 FALSE
72 chr5 126179621 126180319 699
27.78393 19420.967 11960818 11961516 23 5984 2125.733 8.620291e+03 0.000000e+00 2.008157e+03 1.444921e-01 7.224610e-02 -1.000000e+100 -2.101865e+00 -1.586446e+01 -1.686446e+01 0.0238531 TRUE 0.5228326 FALSE LMNB1 NM_001198557 NM_005573 NP_001185486 NP_005564 downstream downstream 67306 NA NA NA 11 NA
60397 58755 0.29 FALSE
73 chr13 43442188 43442724 537
36.06601 19367.447 2780540 2781076 5 6717 4767.599 1.562287e+04 6.855680e+00 8.206292e+03 1.249534e+00 7.243948e-01 -1.115407e+01 -9.288571e-01 -1.360998e+01 -1.439652e+01 0.0238531 TRUE 0.5228326 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 123683 NA NA NA 13 NA
105883 103915 0.29 FALSE
74 chr4 120917640 120918255 616
30.82949 18990.969 11514360 11514975 33 5835 3488.000 1.193247e+04 3.525162e+00 5.498869e+03 3.835227e+00 1.298701e+00 -1.172492e+01 -1.117687e+00 -1.160329e+01 -1.316554e+01 0.0240087 TRUE 0.5228326 FALSE MAD2L1 NM_002358 NP_002349 downstream downstream 69758 NA NA NA 5 NA
7434 6616 0.29 FALSE
75 chr13 43444584 43445085 502
37.33831 18743.832 2782773 2783274 5 6717 5829.651 1.898859e+04 6.219124e+00 1.015318e+04 1.005976e-01 1.593625e-01 -1.157613e+01 -9.032012e-01 -1.752618e+01 -1.686246e+01 0.0243200 TRUE 0.5228326 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 121322 NA NA NA 13 NA
105883 103915 0.29 FALSE
76 chr9 96113643 96114208 566
32.46175 18373.352 8988877 8989442 14 5407 3135.107 1.151133e+04 9.814488e-01 4.163220e+03 0.000000e+00 0.000000e+00 -1.351778e+01 -1.467283e+00 -1.000000e+100 -1.000000e+100 0.0250983 TRUE 0.5228326 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 4947 NA NA NA 5 NA
28215 17555 0.29 FALSE
77 chr13 51748975 51749463 489
36.97313 18079.863 3859810 3860298 6 5837 5363.331 1.391253e+04 1.018200e+01 1.289363e+04 3.098160e-01 0.000000e+00 -1.041615e+01 -1.097261e-01 -1.545461e+01 -1.000000e+100 0.0254874 TRUE 0.5228326 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.29 FALSE
78 chr10 53794449 53795035 587
30.71760 18031.230 5492069 5492655 7 5594 2766.999 9.687255e+03 2.302385e+00 4.145267e+03 0.000000e+00 1.720613e-01 -1.203874e+01 -1.224623e+00 -1.000000e+100 -1.578088e+01 0.0254874 TRUE 0.5228326 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 960215 inside intron 19209 6 18 inside transcription region
1223876 1219309 0.29 FALSE
79 chr1 26753216 26753888 673
26.62943 17921.605 4959068 4959740 5 4338 11278.685 1.287923e+04 1.058828e+03 1.656111e+04 0.000000e+00 2.589425e+04 -3.604506e+00 3.627527e-01 -1.000000e+100 1.007585e+00 0.0258765 TRUE 0.5228326 FALSE LIN28A NM_024674 NP_078950 XM_006710899 XM_006710900 XP_006710962 XP_006710963 inside exon inside 15947 inside exon 0 4 4 3'UTR
18950 15566 0.30 FALSE
80 chr13 56153882 56154307 426
40.54547 17272.368 4512640 4513065 12 5555 7090.373 2.754669e+04 7.823944e+00 7.896170e+03 1.185446e-01 1.066901e+00 -1.178170e+01 -1.802654e+00 -1.782609e+01 -1.465616e+01 0.0268882 TRUE 0.5228326 FALSE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.31 FALSE
81 chrX 113836574 113837059 486
35.39590 17202.405 9203672 9204157 25 4367 4272.884 1.473874e+04 2.287037e+00 6.621034e+03 7.818930e-02 2.279835e+00 -1.265385e+01 -1.154485e+00 -1.752421e+01 -1.265840e+01 0.0271995 TRUE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 18023 inside intron 11214 2 7 5' UTR
326073 180632 0.32 FALSE
82 chr13 51746745 51747159 415
41.27155 17127.694 3857580 3857994 6 5837 8118.227 2.179070e+04 8.028916e+00 1.878299e+04 7.355422e+00 2.068675e+00 -1.140622e+01 -2.142857e-01 -1.153262e+01 -1.336272e+01 0.0272773 TRUE 0.5228326 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.32 FALSE
83 chr9 99979785 99980304 520
32.72675 17017.910 9817553 9818072 16 5375 3525.356 1.270449e+04 5.606731e+00 4.911163e+03 3.536538e+00 1.985577e+00 -1.114589e+01 -1.371202e+00 -1.181071e+01 -1.264349e+01 0.0273552 TRUE 0.5228326 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.32 FALSE
84 chr16 3065436 3066043 608
27.58377 16770.934 1323962 1324569 1 3440 5275.413 1.258239e+04 7.601294e+03 6.011984e+03 9.934211e-01 1.803997e+02 -7.270896e-01 -1.065494e+00 -1.362864e+01 -6.124066e+00 0.0283669 TRUE 0.5228326 FALSE CLDN6 NM_021195 NP_067018 inside exon inside 2145 inside exon 0 2 2 overlaps 5' UTR
3475 662 0.32 FALSE
85 chr9 99980938 99981519 582
28.69672 16701.494 9818706 9819287 16 5375 2530.087 9.586055e+03 5.504295e+00 3.056032e+03 0.000000e+00 2.846220e+00 -1.076616e+01 -1.649278e+00 -1.000000e+100 -1.171767e+01 0.0284447 TRUE 0.5228326 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.32 FALSE
86 chr11 2016404 2017024 621
26.45597 16429.160 638587 639207 1 1841 30779.267 6.327858e+01 1.359313e+05 2.803704e+01 1.767472e+04 1.990354e+02 1.106887e+01 -1.174383e+00 8.125755e+00 1.653236e+00 0.0288338 TRUE 0.5228326 FALSE H19 NR_002196 NA NA 0 NA NA NA 4 NA
0 0 0.32 FALSE
87 chr9 90030709 90031165 457
35.73261 16329.804 8216426 8216882 12 5446 5090.214 1.625399e+04 1.824726e+01 9.177902e+03 5.273523e-01 4.059081e-01 -9.798898e+00 -8.245576e-01 -1.491167e+01 -1.528928e+01 0.0290673 TRUE 0.5228326 FALSE DAPK1 NM_001288729 NM_001288730 NM_001288731 NM_004938 NP_001275658 NP_001275659 NP_001275660 NP_004929 XM_005251757 XM_006716988 XP_005251814 XP_006717051 upstream upstream 81493 NA NA NA 26 NA
210891 208286 0.32 FALSE
88 chr20 38898062 38898550 489
32.35083 15819.555 4365754 4366242 10 5561 3710.479 1.311042e+04 7.229039e-01 5.427930e+03 0.000000e+00 1.332209e+01 -1.414655e+01 -1.272240e+00 -1.000000e+100 -9.942678e+00 0.0313242 TRUE 0.5228326 FALSE MAFB NM_005461 NP_005452 downstream downstream 419326 NA NA NA 1 NA
3359 971 0.32 FALSE
89 chr11 96461598 96462056 459
34.42289 15800.107 12948890 12949348 22 2483 4982.913 1.426658e+04 1.058279e+01 1.063238e+04 6.318083e-01 4.382353e+00 -1.039670e+01 -4.241748e-01 -1.446279e+01 -1.166865e+01 0.0313242 TRUE 0.5228326 FALSE JRKL-AS1 NR_047481 NA NA 0 NA NA NA 5 NA
0 0 0.32 FALSE
90 chr10 53795521 53795971 451
35.01622 15792.315 5493141 5493591 7 5594 4281.393 1.601845e+04 2.817073e+00 5.384358e+03 0.000000e+00 1.343681e+00 -1.247325e+01 -1.572888e+00 -1.000000e+100 -1.354126e+01 0.0313242 TRUE 0.5228326 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 961287 inside intron 18273 6 18 inside transcription region
1223876 1219309 0.32 FALSE
91 chr12 14861975 14862472 498
31.53517 15704.516 2904997 2905494 11 5086 2972.004 9.096644e+03 8.112450e-01 5.760839e+03 0.000000e+00 1.723896e+00 -1.345291e+01 -6.590553e-01 -1.000000e+100 -1.236545e+01 0.0315576 TRUE 0.5228326 FALSE GUCY2C NM_004963 NP_004954 upstream upstream 12456 NA NA NA 27 NA
83951 83331 0.32 FALSE
92 chr9 96115163 96115582 420
37.29741 15664.912 8990397 8990816 14 5407 5181.100 1.607174e+04 1.724524e+01 9.815190e+03 7.940476e-01 5.297619e-01 -9.864112e+00 -7.114381e-01 -1.430494e+01 -1.488882e+01 0.0315576 TRUE 0.5228326 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 6467 NA NA NA 5 NA
28215 17555 0.32 FALSE
93 chr4 88845652 88846211 560
27.48896 15393.817 8280193 8280752 18 5462 2869.611 1.059714e+04 1.968125e+01 3.707593e+03 2.345536e+01 1.803571e-01 -9.072638e+00 -1.515121e+00 -8.819542e+00 -1.584246e+01 0.0320246 TRUE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 50591 NA NA NA 7 NA
7761 6000 0.32 FALSE
94 chr4 88847895 88848389 495
30.99509 15342.567 8282436 8282930 18 5462 3052.250 9.491968e+03 2.034848e+01 5.748856e+03 7.676770e-02 0.000000e+00 -8.865642e+00 -7.234324e-01 -1.691585e+01 -1.000000e+100 0.0321802 TRUE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 48413 NA NA NA 7 NA
7761 6000 0.32 FALSE
95 chr5 120033292 120033743 452
33.75582 15257.631 11488498 11488949 19 4521 4051.761 1.306790e+04 1.323562e+01 7.177277e+03 1.681416e-01 2.234513e-01 -9.947386e+00 -8.645188e-01 -1.624599e+01 -1.583571e+01 0.0323359 TRUE 0.5228326 FALSE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 233273 NA NA NA 3 NA
222945 205505 0.32 FALSE
96 chr4 88844632 88845102 471
32.38390 15252.817 8279173 8279643 18 5462 3562.843 1.235567e+04 2.519639e+01 5.432314e+03 0.000000e+00 1.031847e+00 -8.937741e+00 -1.185534e+00 -1.000000e+100 -1.354766e+01 0.0323359 TRUE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 51700 NA NA NA 7 NA
7761 6000 0.32 FALSE
97 chr6 95264149 95264625 477
31.32779 14943.354 10591832 10592308 19 4107 4400.684 1.338332e+04 2.282075e+01 8.580763e+03 7.199161e+00 9.316562e+00 -9.195874e+00 -6.412582e-01 -1.086032e+01 -1.048835e+01 0.0327250 TRUE 0.5228326 FALSE MANEA NM_024641 NP_078917 XM_005267147 XP_005267204 upstream upstream 760748 NA NA NA 2 NA
9881 596 0.32 FALSE
98 chr9 99981864 99982252 389
38.37747 14928.835 9819632 9820020 16 5375 5420.202 1.968798e+04 1.151671e+00 7.411486e+03 1.298201e-01 2.596401e-01 -1.406130e+01 -1.409480e+00 -1.721044e+01 -1.621044e+01 0.0328028 TRUE 0.5228326 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.32 FALSE
99 chr2 67563792 67564338 547
26.96341 14748.988 7288604 7289150 17 8129 2273.538 1.045125e+04 3.692870e+00 9.119113e+02 9.141000e-04 8.308958e-01 -1.146665e+01 -3.518639e+00 -2.344679e+01 -1.361865e+01 0.0330363 TRUE 0.5228326 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 60104 NA NA NA 6 NA
13091 12589 0.33 FALSE
100 chr1 26755712 26756212 501
29.08615 14572.160 4961564 4962064 5 4338 15135.704 1.787545e+04 1.423259e+03 2.377972e+04 0.000000e+00 3.260009e+04 -3.650709e+00 4.117520e-01 -1.000000e+100 8.668966e-01 0.0333476 TRUE 0.5228326 FALSE LIN28A NM_024674 NP_078950 XM_006710899 XM_006710900 XP_006710962 XP_006710963 inside exon inside 18443 inside exon 0 4 4 3'UTR
18950 15566 0.33 FALSE
101 chr8 115308068 115308479 412
35.25251 14524.034 10978075 10978486 27 1886 4427.031 1.792430e+04 1.225728e-01 4.210734e+03 0.000000e+00 0.000000e+00 -1.715792e+01 -2.089773e+00 -1.000000e+100 -1.000000e+100 0.0334254 TRUE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 858826 NA NA NA 71 NA
1214083 1212083 0.33 FALSE
102 chr8 115297057 115297479 423
33.83561 14312.465 10967064 10967486 26 5529 4545.169 1.357679e+04 1.791371e+01 9.124734e+03 3.342790e+00 3.062648e+00 -9.565863e+00 -5.732882e-01 -1.198780e+01 -1.211408e+01 0.0338145 TRUE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 847815 NA NA NA 71 NA
1214083 1212083 0.33 FALSE
103 chr9 76703336 76703764 429
33.26880 14272.317 7024316 7024744 5 5530 3614.107 1.252153e+04 2.075758e+00 5.543555e+03 2.867133e+00 5.023310e-01 -1.255849e+01 -1.175528e+00 -1.209251e+01 -1.460541e+01 0.0338924 TRUE 0.5228326 FALSE RORB NM_006914 NP_008845 upstream upstream 408488 NA NA NA 10 NA
189865 187641 0.33 FALSE
104 chr1 26754506 26754983 478
29.77623 14233.036 4960358 4960835 5 4338 16599.265 1.956677e+04 1.609012e+03 2.415231e+04 0.000000e+00 3.766823e+04 -3.604159e+00 3.037554e-01 -1.000000e+100 9.449424e-01 0.0340480 TRUE 0.5228326 FALSE LIN28A NM_024674 NP_078950 XM_006710899 XM_006710900 XP_006710962 XP_006710963 inside exon inside 17237 inside exon 0 4 4 3'UTR
18950 15566 0.33 FALSE
105 chr2 217559593 217560093 501
28.29420 14175.393 23460265 23460765 56 1039 7990.144 1.051846e+02 1.095417e+04 7.575848e+00 1.717863e+04 1.170516e+04 6.702412e+00 -3.795373e+00 7.351547e+00 6.798077e+00 0.0341258 TRUE 0.5228326 FALSE IGFBP5 NM_000599 NP_000590 inside exon inside 179 inside exon 0 1 4 5' UTR
23444 18024 0.33 FALSE
106 chr6 95266021 95266426 406
33.03470 13412.086 10593704 10594109 19 4107 3885.321 1.351524e+04 7.044335e+00 5.898990e+03 2.487685e-01 5.084975e+00 -1.090584e+01 -1.196047e+00 -1.572942e+01 -1.137606e+01 0.0359158 TRUE 0.5228326 FALSE MANEA NM_024641 NP_078917 XM_005267147 XP_005267204 upstream upstream 758947 NA NA NA 2 NA
9881 596 0.33 FALSE
107 chr8 120118039 120118556 518
25.63179 13277.267 11210801 11211318 32 10012 1719.041 3.851351e-01 9.749030e-02 8.108108e-01 8.593599e+03 3.137066e-01 -1.982034e+00 1.074001e+00 1.444561e+01 -2.959490e-01 0.0361493 TRUE 0.5228326 FALSE COLEC10 NM_006438 NP_006429 XM_005250756 XP_005250813 inside exon inside 38615 inside exon 0 6 6 overlaps 3'UTR
39778 38909 0.33 FALSE
108 chr11 94390137 94390621 485
27.37572 13277.225 12613174 12613658 19 6962 2158.864 4.324822e+03 1.988660e+00 6.465221e+03 2.287629e+00 0.000000e+00 -1.108663e+01 5.800590e-01 -1.088457e+01 -1.000000e+100 0.0361493 TRUE 0.5228326 FALSE PIWIL4 NM_152431 NP_689644 NA NA 0 NA NA NA 19 NA
0 0 0.33 FALSE
109 chr5 75656223 75656603 381
34.70456 13222.437 7390193 7390573 9 2435 4790.536 1.707749e+04 1.609055e+01 6.849895e+03 3.321522e+00 5.884514e+00 -1.005167e+01 -1.317942e+00 -1.232796e+01 -1.150288e+01 0.0363827 TRUE 0.5228326 FALSE SV2C NM_014979 NP_055794 XM_005248470 XP_005248527 downstream downstream 276918 NA NA NA 13 NA
242111 193796 0.33 FALSE
110 chr20 12738794 12739189 396
32.92935 13040.021 1450670 1451065 3 8409 3498.707 1.346230e+04 4.891414e+00 4.025984e+03 1.085859e-01 2.550505e-01 -1.142639e+01 -1.741512e+00 -1.691973e+01 -1.568778e+01 0.0365384 TRUE 0.5228326 FALSE SPTLC3 NM_018327 NP_060797 XR_244218 upstream upstream 250438 NA NA NA 2 NA
41189 40087 0.33 FALSE
111 chr6 31137993 31138374 382
34.10470 13027.994 3905381 3905762 10 382 4458.500 9.074832e+03 1.206021e+01 1.320199e+04 0.000000e+00 3.616492e+00 -9.555472e+00 5.408124e-01 -1.000000e+100 -1.129306e+01 0.0366940 TRUE 0.5228326 FALSE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 77 inside exon 0 1 5 inside transcription region
6337 6019 0.33 FALSE
112 chr2 189873650 189873947 298
43.23194 12883.117 20139715 20140012 41 27987 19167.536 6.124161e-01 1.521884e+04 6.879195e-01 8.061664e+04 9.077181e-01 1.460099e+01 1.677274e-01 1.700621e+01 5.677321e-01 0.0370832 TRUE 0.5228326 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 34551 inside exon 0 48 51 inside transcription region
38373 37284 0.33 FALSE
113 chr9 96114293 96114687 395
32.46915 12825.315 8989527 8989921 14 5407 3320.672 1.211646e+04 2.548101e+00 4.483900e+03 3.835443e-01 6.455700e-02 -1.221526e+01 -1.434143e+00 -1.494722e+01 -1.751796e+01 0.0373945 TRUE 0.5228326 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 5597 NA NA NA 5 NA
28215 17555 0.33 FALSE
114 chr16 13448534 13448926 393
32.58147 12804.517 2742858 2743250 5 5109 3461.378 1.268077e+04 1.653181e+01 4.609341e+03 1.170483e-01 1.284987e-01 -9.583182e+00 -1.460010e+00 -1.672518e+01 -1.659053e+01 0.0375501 TRUE 0.5228326 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 453057 NA NA NA 5 NA
338796 333344 0.33 FALSE
115 chr6 115358107 115358429 323
38.59639 12466.636 12490798 12491120 24 2818 8055.180 2.564254e+04 3.335449e+01 1.457874e+04 1.063158e+01 1.063158e+01 -9.586443e+00 -8.146732e-01 -1.123597e+01 -1.123597e+01 0.0389509 TRUE 0.5228326 FALSE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 694567 NA NA NA 5 NA
286790 5588 0.33 FALSE
116 chr5 92919338 92919757 420
29.48181 12382.361 9118758 9119177 12 4724 1970.104 0.000000e+00 6.892857e-01 3.404762e-01 7.240733e+03 2.608758e+03 1.000000e+100 1.000000e+100 1.000000e+100 1.000000e+100 0.0393401 TRUE 0.5228326 FALSE NR2F1 NM_005654 NP_005645 inside exon inside 295 inside exon 0 1 3 5' UTR
10743 8818 0.33 FALSE
117 chr14 38663051 38663423 373
33.16679 12371.214 2169938 2170310 3 5592 4154.092 1.501784e+04 9.276139e+00 5.733349e+03 2.081769e+00 7.916890e+00 -1.066086e+01 -1.389227e+00 -1.281658e+01 -1.088946e+01 0.0393401 TRUE 0.5228326 FALSE SSTR1 NM_001049 NP_001040 upstream upstream 13781 NA NA NA 3 NA
5064 1175 0.33 FALSE
118 chr12 59720606 59720948 343
35.81625 12284.974 8415189 8415531 15 5621 4679.413 1.560075e+04 3.083090e+00 7.777882e+03 8.746360e-02 1.526093e+01 -1.230495e+01 -1.004166e+00 -1.744450e+01 -9.997556e+00 0.0398848 TRUE 0.5228326 FALSE SLC16A7 NM_001270622 NM_001270623 NM_004731 NP_001257551 NP_001257552 NP_004722 NR_073055 NR_073056 XM_005269231 XM_006719693 XP_005269288 XP_006719756 upstream upstream 268873 NA NA NA 6 NA
193814 74877 0.33 FALSE
119 chr4 88858004 88858439 436
27.67109 12064.593 8292484 8292919 19 5968 2221.359 8.119538e+03 9.517202e+00 2.976435e+03 5.332569e-01 7.729358e-01 -9.736644e+00 -1.447812e+00 -1.389428e+01 -1.335876e+01 0.0408965 TRUE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 38363 NA NA NA 7 NA
7761 6000 0.33 FALSE
120 chr12 79939060 79939363 304
39.19671 11915.798 10243033 10243336 22 5631 6113.919 1.956355e+04 8.866776e+00 1.099502e+04 4.983553e-01 1.661184e+00 -1.110747e+01 -8.313179e-01 -1.526063e+01 -1.352367e+01 0.0412857 TRUE 0.5228326 FALSE PAWR NM_002583 NP_002574 XM_006719435 XM_006719436 XP_006719498 XP_006719499 downstream downstream 145427 NA NA NA 7 NA
99045 97637 0.33 FALSE
121 chr1 185919814 185920163 350
33.95527 11884.343 25066963 25067312 32 5595 4135.115 1.407415e+04 1.247143e+01 6.586234e+03 0.000000e+00 2.721429e+00 -1.014021e+01 -1.095522e+00 -1.000000e+100 -1.233640e+01 0.0414413 TRUE 0.5228326 FALSE HMCN1 NM_031935 NP_114141 inside intron inside 216131 inside intron 11487 12 107 inside transcription region
456402 455098 0.33 FALSE
122 chrX 86940474 86940885 412
28.79489 11863.496 6794748 6795159 11 4336 2468.723 8.041492e+03 2.278641e+01 4.278993e+03 7.524270e-02 2.669903e-01 -8.463146e+00 -9.101919e-01 -1.670555e+01 -1.487839e+01 0.0415191 TRUE 0.5228326 FALSE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 167759 NA NA NA 11 NA
152335 148637 0.33 FALSE
123 chr2 189875374 189875616 243
48.31063 11739.484 20141439 20141681 41 27987 30593.053 2.991770e+00 2.481816e+04 3.456790e-01 1.281426e+05 1.164609e+00 1.301811e+01 -3.113494e+00 1.538639e+01 -1.361153e+00 0.0419861 TRUE 0.5228326 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 36275 inside exon 0 50 51 inside transcription region
38373 37284 0.33 FALSE
124 chr2 67561534 67561921 388
30.22362 11726.764 7286346 7286733 17 8129 3213.077 1.480877e+04 3.123711e+00 1.252853e+03 2.590206e-01 3.827320e-01 -1.221090e+01 -3.563162e+00 -1.580303e+01 -1.523976e+01 0.0420639 TRUE 0.5228326 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 62521 NA NA NA 6 NA
13091 12589 0.33 FALSE
125 chr10 53795111 53795481 371
31.60442 11725.239 5492731 5493101 7 5594 3039.199 1.126393e+04 0.000000e+00 3.932066e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -1.518350e+00 -1.000000e+100 -1.000000e+100 0.0420639 TRUE 0.5228326 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 960877 inside intron 18763 6 18 inside transcription region
1223876 1219309 0.33 FALSE
126 chr9 76701619 76701963 345
33.42157 11530.442 7022599 7022943 5 5530 4009.857 1.256670e+04 3.476812e+00 7.477796e+03 0.000000e+00 1.317391e+00 -1.181955e+01 -7.489204e-01 -1.000000e+100 -1.321963e+01 0.0435426 TRUE 0.5228326 FALSE RORB NM_006914 NP_008845 upstream upstream 410289 NA NA NA 10 NA
189865 187641 0.33 FALSE
127 chr6 132225441 132225809 369
31.23908 11527.221 13972844 13973212 41 4872 3548.744 1.126588e+04 2.048238e+01 6.451726e+03 7.601626e-01 4.872629e+00 -9.103360e+00 -8.042024e-01 -1.385529e+01 -1.117497e+01 0.0435426 TRUE 0.5228326 FALSE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 96285 NA NA NA 25 NA
87139 82475 0.33 FALSE
128 chr10 53794160 53794411 252
45.45602 11454.916 5491780 5492031 7 5594 10469.738 3.734098e+04 5.376984e+00 1.499961e+04 5.615079e-01 2.162698e+00 -1.276167e+01 -1.315835e+00 -1.602109e+01 -1.407564e+01 0.0440095 TRUE 0.5228326 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 959926 inside intron 19833 6 18 inside transcription region
1223876 1219309 0.33 FALSE
129 chr16 13450360 13450741 382
29.95802 11443.963 2744684 2745065 5 5109 2590.868 8.853296e+03 1.321990e-01 4.100724e+03 1.321990e-01 5.759160e-02 -1.603122e+01 -1.110336e+00 -1.603122e+01 -1.723000e+01 0.0440095 TRUE 0.5228326 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 454883 NA NA NA 5 NA
338796 333344 0.33 FALSE
130 chr4 88845216 88845546 331
34.55218 11436.771 8279757 8280087 18 5462 4620.713 1.443148e+04 5.934139e+01 8.611116e+03 7.024169e-01 9.184290e-01 -7.925965e+00 -7.449476e-01 -1.432653e+01 -1.393969e+01 0.0440095 TRUE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 51256 NA NA NA 7 NA
7761 6000 0.33 FALSE
131 chr15 35082428 35082756 329
34.75101 11433.082 1974583 1974911 1 5287 24686.754 5.816717e+02 1.141394e+05 8.046252e+03 3.103343e+00 6.633040e+02 7.616377e+00 3.790040e+00 -7.550238e+00 1.894649e-01 0.0440095 TRUE 0.5228326 FALSE ACTC1 NM_005159 NP_005150 inside exon inside 5171 inside exon 0 7 7 overlaps 3'UTR
7630 4396 0.33 FALSE
132 chr12 79934858 79935185 328
34.40001 11283.205 10238831 10239158 22 5631 4358.353 1.300287e+04 4.492378e+00 8.776675e+03 0.000000e+00 7.728658e+00 -1.149906e+01 -5.670834e-01 -1.000000e+100 -1.071632e+01 0.0447099 TRUE 0.5228326 FALSE PAWR NM_002583 NP_002574 XM_006719435 XM_006719436 XP_006719498 XP_006719499 downstream downstream 149605 NA NA NA 7 NA
99045 97637 0.33 FALSE
133 chr6 87795219 87795551 333
33.75496 11240.402 9872877 9873209 15 2707 39194.465 0.000000e+00 1.959703e+05 6.066066e-01 1.424925e+00 0.000000e+00 1.000000e+100 1.000000e+100 1.000000e+100 NaN 0.0449434 TRUE 0.5228326 FALSE CGA NM_000735 NM_001252383 NP_000726 NP_001239312 inside exon inside 9314 inside exon 0 5 5 overlaps 3'UTR
9649 2444 0.33 FALSE
134 chr2 217537053 217537440 388
28.90477 11215.050 23438000 23438387 55 6953 6481.196 5.552320e+01 7.680643e+03 7.096649e+00 1.309123e+04 1.157149e+04 7.111993e+00 -2.967881e+00 7.881294e+00 7.703269e+00 0.0450212 TRUE 0.5228326 FALSE IGFBP5 NM_000599 NP_000590 inside exon inside 22832 inside exon 0 4 4 3'UTR
23444 18024 0.33 FALSE
135 chr5 120035949 120036292 344
32.45465 11164.399 11491155 11491498 19 4521 3767.339 1.490153e+04 7.835756e+00 3.925358e+03 1.571221e+00 3.938953e-01 -1.089310e+01 -1.924565e+00 -1.321129e+01 -1.520729e+01 0.0456438 TRUE 0.5228326 FALSE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 235930 NA NA NA 3 NA
222945 205505 0.35 FALSE
136 chr10 53793561 53793862 302
36.83200 11123.265 5491186 5491487 7 5594 6324.201 1.564287e+04 5.344536e+01 1.592469e+04 0.000000e+00 0.000000e+00 -8.193225e+00 2.575960e-02 -1.000000e+100 -1.000000e+100 0.0460329 TRUE 0.5228326 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 959327 inside intron 20382 6 18 inside transcription region
1223876 1219309 0.35 FALSE
137 chr5 92929683 92930062 380
29.09485 11056.042 9128801 9129180 13 857 1859.638 3.144737e-01 6.644737e-01 3.986842e-01 6.503689e+03 2.793121e+03 1.079273e+00 3.423072e-01 1.433603e+01 1.311665e+01 0.0465777 TRUE 0.5228326 FALSE NR2F1 NM_005654 NP_005645 overlaps 3' overlaps 3' 8953 inside exon 0 4 4 3'UTR
9056 8818 0.35 FALSE
138 chr6 91380410 91380690 281
38.82218 10909.032 10443541 10443821 17 3481 8932.939 2.798177e+04 5.157473e+01 1.659841e+04 1.508363e+01 1.785587e+01 -9.083607e+00 -7.534419e-01 -1.085729e+01 -1.061387e+01 0.0475116 TRUE 0.5228326 FALSE MAP3K7 NM_003188 NM_145331 NM_145332 NM_145333 NP_003179 NP_663304 NP_663305 NP_663306 XM_006715553 XP_006715616 upstream upstream 83390 NA NA NA 17 NA
73728 70382 0.35 FALSE
139 chr6 31132421 31132644 224
48.61635 10890.063 3899824 3900047 9 1641 18081.934 3.749322e+04 6.802679e+01 5.283186e+04 1.890625e+00 1.468080e+01 -9.106311e+00 4.947785e-01 -1.427548e+01 -1.131848e+01 0.0475116 TRUE 0.5228326 FALSE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 5807 inside exon 0 5 5 inside transcription region
6337 6019 0.35 FALSE
140 chr5 121812130 121812455 326
33.36353 10876.512 11608426 11608751 21 3455 3994.339 1.216550e+04 1.416871e+01 7.788117e+03 2.363497e+00 1.549080e+00 -9.745871e+00 -6.434489e-01 -1.232958e+01 -1.293910e+01 0.0475116 TRUE 0.5228326 FALSE MGC32805 NR_051996 NA NA 0 NA NA NA 6 NA
0 0 0.35 FALSE
141 chr3 112138588 112138829 242
44.94289 10876.180 10612985 10613226 20 4830 14458.867 5.504348e+04 4.913017e+01 1.719761e+04 2.272727e+00 1.845041e+00 -1.012975e+01 -1.678364e+00 -1.456386e+01 -1.486463e+01 0.0475116 TRUE 0.5228326 FALSE BTLA NM_001085357 NM_181780 NP_001078826 NP_861445 XM_005247136 XP_005247193 downstream downstream 79579 NA NA NA 5 NA
35595 33250 0.35 FALSE
142 chr5 75655754 75656101 348
31.22180 10865.186 7389724 7390071 9 2435 3486.138 1.027050e+04 1.810345e+01 7.132165e+03 6.724138e+00 3.196839e+00 -9.148026e+00 -5.260942e-01 -1.057687e+01 -1.164957e+01 0.0475116 TRUE 0.5228326 FALSE SV2C NM_014979 NP_055794 XM_005248470 XP_005248527 downstream downstream 276449 NA NA NA 13 NA
242111 193796 0.35 FALSE
143 chr13 51744369 51744657 289
37.57257 10858.473 3855204 3855492 6 5837 5024.803 1.248068e+04 2.958478e-01 1.264256e+04 0.000000e+00 4.775087e-01 -1.536448e+01 1.859160e-02 -1.000000e+100 -1.467381e+01 0.0475116 TRUE 0.5228326 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.35 FALSE
144 chr20 12324746 12325113 368
29.46459 10842.970 1422222 1422589 2 4153 2541.613 9.642151e+03 2.487772e+00 3.061981e+03 0.000000e+00 1.445652e+00 -1.192029e+01 -1.654890e+00 -1.000000e+100 -1.270342e+01 0.0475894 TRUE 0.5228326 FALSE BTBD3 NM_001282550 NM_001282551 NM_001282552 NM_001282554 NM_014962 NM_181443 NP_001269479 NP_001269480 NP_001269481 NP_001269483 NP_055777 NP_852108 XM_006723550 XM_006723551 XP_006723613 XP_006723614 downstream downstream 453269 NA NA NA 5 NA
35766 5207 0.35 FALSE
145 chr13 56157484 56157848 365
29.68172 10833.827 4516242 4516606 12 5555 2608.458 1.038647e+04 5.263014e+00 2.650477e+03 0.000000e+00 8.356160e-02 -1.094653e+01 -1.970381e+00 -1.000000e+100 -1.692343e+01 0.0475894 TRUE 0.5228326 FALSE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.35 FALSE
146 chr5 120034920 120035239 320
33.82118 10822.777 11490126 11490445 19 4521 5176.292 1.401236e+04 3.442656e+01 1.183404e+04 2.906250e-01 3.375000e-01 -8.668962e+00 -2.437571e-01 -1.555718e+01 -1.534145e+01 0.0475894 TRUE 0.5228326 FALSE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 234901 NA NA NA 3 NA
222945 205505 0.35 FALSE
147 chr5 120036353 120036701 349
31.01040 10822.628 11491559 11491907 19 4521 3012.731 1.223663e+04 2.002865e+00 2.825020e+03 0.000000e+00 0.000000e+00 -1.257685e+01 -2.114874e+00 -1.000000e+100 -1.000000e+100 0.0475894 TRUE 0.5228326 FALSE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 236334 NA NA NA 3 NA
222945 205505 0.35 FALSE
148 chrX 91360196 91360513 318
33.58445 10679.855 6907477 6907794 13 5524 4106.989 1.189369e+04 3.050314e+01 8.609958e+03 0.000000e+00 7.940252e-01 -8.607023e+00 -4.661186e-01 -1.000000e+100 -1.387065e+01 0.0485233 TRUE 0.5228326 FALSE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 269736 inside intron 95861 3 7 inside transcription region
787768 632811 0.35 FALSE
149 chr16 13449230 13449601 372
28.52249 10610.366 2743554 2743925 5 5109 2319.302 7.922539e+03 8.560484e+00 3.664595e+03 5.430108e-01 2.715054e-01 -9.854055e+00 -1.112309e+00 -1.383269e+01 -1.483269e+01 0.0492237 TRUE 0.5228326 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 453753 NA NA NA 5 NA
338796 333344 0.35 FALSE
150 chr14 47577617 47577911 295
35.77314 10553.077 2717997 2718291 7 4412 4821.758 1.494442e+04 2.466102e+01 9.137661e+03 5.135593e-01 1.540678e+00 -9.243158e+00 -7.097096e-01 -1.482872e+01 -1.324375e+01 0.0495350 TRUE 0.5228326 FALSE MDGA2 NM_001113498 NM_182830 NP_001106970 NP_878250 NR_103766 XM_006720068 XP_006720131 inside intron inside 517817 inside intron 11291 6 15 5' UTR
755585 189427 0.35 FALSE
151 chr14 38662564 38662913 350
29.98959 10496.357 2169451 2169800 3 5592 2789.569 9.513387e+03 1.114000e+01 4.422614e+03 4.171429e-01 2.885714e-01 -9.738066e+00 -1.105060e+00 -1.447713e+01 -1.500874e+01 0.0496906 TRUE 0.5228326 FALSE SSTR1 NM_001049 NP_001040 upstream upstream 14291 NA NA NA 3 NA
5064 1175 0.35 FALSE
152 chr4 88846724 88847060 337
31.10626 10482.811 8281265 8281601 18 5462 3438.477 1.187944e+04 3.507122e+01 5.274605e+03 3.265579e+00 0.000000e+00 -8.403964e+00 -1.171332e+00 -1.182884e+01 -1.000000e+100 0.0497685 TRUE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 49742 NA NA NA 7 NA
7761 6000 0.35 FALSE
153 chr10 91844959 91845224 266
39.11111 10403.556 9358333 9358598 15 3399 7572.206 1.971768e+04 4.406391e+01 1.808853e+04 3.796992e+00 6.958647e+00 -8.805676e+00 -1.244142e-01 -1.234234e+01 -1.146840e+01 0.0500798 FALSE 0.5228326 FALSE LINC00865 NR_038382 NA NA 0 NA NA NA 4 NA
0 0 0.35 FALSE
154 chr2 64482298 64482661 364
28.27498 10292.093 6919547 6919910 15 2909 3094.671 1.073615e+04 2.164148e+01 4.702339e+03 2.960165e+00 1.026099e+01 -8.954462e+00 -1.191026e+00 -1.182451e+01 -1.003109e+01 0.0509358 FALSE 0.5228326 FALSE LINC00309 NR_033837 NA NA 0 NA NA NA 6 NA
0 0 0.36 FALSE
155 chr13 56229789 56230096 308
33.31487 10260.980 4530253 4530560 13 4045 3850.772 1.527416e+04 3.719156e+00 3.973953e+03 5.016234e-01 1.529221e+00 -1.200383e+01 -1.942446e+00 -1.489413e+01 -1.328601e+01 0.0509358 FALSE 0.5228326 FALSE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.36 FALSE
156 chrX 124525360 124525694 335
30.34314 10164.953 10073511 10073845 30 5372 2758.854 8.217360e+03 1.971642e+00 5.574037e+03 1.194030e-01 7.835821e-01 -1.202506e+01 -5.599523e-01 -1.607055e+01 -1.335630e+01 0.0523367 FALSE 0.5228326 FALSE LOC100129520 NM_001195272 NP_001182201 XM_005262352 XP_005262409 downstream downstream 71391 NA NA NA 1 NA
2981 2981 0.36 FALSE
157 chr1 215583978 215584236 259
39.16608 10144.015 28103836 28104094 35 4889 8733.091 2.765404e+04 5.861969e+01 1.592406e+04 1.205985e+01 1.667375e+01 -8.881889e+00 -7.962815e-01 -1.116306e+01 -1.069570e+01 0.0523367 FALSE 0.5228326 FALSE KCTD3 NM_016121 NP_057205 XM_005273156 XM_005273157 XM_005273158 XP_005273213 XP_005273214 XP_005273215 upstream upstream 156499 NA NA NA 18 NA
54414 52931 0.36 FALSE
158 chr4 187163158 187163451 294
34.46163 10131.719 16444125 16444418 51 294 3912.412 9.703162e+03 3.435374e-01 9.858029e+03 0.000000e+00 5.272109e-01 -1.478570e+01 2.284430e-02 -1.000000e+100 -1.416779e+01 0.0523367 FALSE 0.5228326 FALSE KLKB1 NM_000892 NP_000883 XM_005262987 XM_006714213 XP_005263044 XP_006714276 inside intron inside 14486 inside intron -3639 7 15 inside transcription region
30953 25911 0.36 FALSE
159 chr1 55490840 55491122 283
35.75147 10117.665 10679232 10679514 10 5549 5357.094 1.293638e+04 4.537986e+01 1.379639e+04 5.531802e+00 1.784452e+00 -8.155166e+00 9.285630e-02 -1.119140e+01 -1.282367e+01 0.0525701 FALSE 0.5228326 FALSE PCSK9 NM_174936 NP_777596 NR_110451 NA NA 0 NA NA NA 6 NA
0 0 0.36 FALSE
160 chr6 115355612 115355933 322
31.30581 10080.469 12488740 12489061 24 2818 3521.688 1.036132e+04 1.602329e+01 7.220081e+03 4.861801e+00 6.158385e+00 -9.336821e+00 -5.211205e-01 -1.105743e+01 -1.071637e+01 0.0529593 FALSE 0.5228326 FALSE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 692072 NA NA NA 5 NA
286790 5588 0.36 FALSE
161 chr11 27652852 27653198 347
28.97012 10052.633 3884184 3884530 11 5437 2652.198 1.065127e+04 1.375793e+01 2.592764e+03 2.910663e+00 2.910663e-01 -9.596547e+00 -2.038463e+00 -1.183739e+01 -1.515932e+01 0.0530371 FALSE 0.5228326 FALSE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.36 FALSE
162 chr20 13340738 13341009 272
36.78382 10005.199 1484602 1484873 4 4259 5965.106 2.195889e+04 1.002941e+01 7.845642e+03 2.143382e+00 8.825368e+00 -1.109635e+01 -1.484842e+00 -1.332263e+01 -1.128086e+01 0.0534262 FALSE 0.5228326 FALSE TASP1 NM_017714 NP_060184 XM_006723589 XM_006723590 XP_006723652 XP_006723653 XR_430268 NA NA 0 NA NA NA 10 NA
0 0 0.36 FALSE
163 chr3 46619249 46619494 246
40.66714 10004.116 5030253 5030498 11 4701 6777.180 1.900786e+04 2.172764e+00 1.487587e+04 0.000000e+00 0.000000e+00 -1.309478e+01 -3.536223e-01 -1.000000e+100 -1.000000e+100 0.0534262 FALSE 0.5228326 FALSE LRRC2 NM_024512 NM_024750 NP_078788 XM_006713332 XP_006713395 inside intron inside 2078 inside intron -1933 1 9 5' UTR
64694 32577 0.36 FALSE
164 chr5 75657904 75658188 285
34.95377 9961.825 7391866 7392150 9 2435 4366.318 1.522206e+04 6.128070e+00 6.600898e+03 7.070175e-01 1.798246e+00 -1.127844e+01 -1.205429e+00 -1.439406e+01 -1.304729e+01 0.0537375 FALSE 0.5228326 FALSE SV2C NM_014979 NP_055794 XM_005248470 XP_005248527 downstream downstream 278599 NA NA NA 13 NA
242111 193796 0.36 FALSE
165 chr11 68458385 68458644 260
37.77039 9820.301 9302606 9302865 15 6594 13136.770 1.214501e+04 2.415038e+02 5.325202e+04 3.501923e+00 4.181731e+01 -5.652174e+00 2.132472e+00 -1.175993e+01 -8.182048e+00 0.0551383 FALSE 0.5228326 FALSE GAL NM_015973 NP_057057 XM_006718580 XP_006718643 overlaps 3' overlaps 3' 6402 inside exon 0 6 6 overlaps 3'UTR
6660 6063 0.36 FALSE
166 chr11 27650665 27650969 305
32.18282 9815.761 3881997 3882301 11 5437 3656.262 1.214985e+04 6.632623e+01 6.064244e+03 2.032787e-01 6.868852e-01 -7.517143e+00 -1.002539e+00 -1.586712e+01 -1.411051e+01 0.0552162 FALSE 0.5228326 FALSE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.36 FALSE
167 chr8 72614479 72614768 290
33.83121 9811.050 7370486 7370775 12 1416 3879.399 1.081176e+04 4.806897e+00 8.580428e+03 0.000000e+00 0.000000e+00 -1.113521e+01 -3.334800e-01 -1.000000e+100 -1.000000e+100 0.0552162 FALSE 0.5228326 FALSE MSC NM_005098 NP_005089 downstream downstream 141963 NA NA NA 2 NA
2954 1517 0.36 FALSE
168 chr4 120919951 120920299 349
28.10474 9808.555 11516671 11517019 33 5835 2250.552 8.612185e+03 5.027221e+00 2.635403e+03 0.000000e+00 1.446991e-01 -1.074240e+01 -1.708356e+00 -1.000000e+100 -1.586104e+01 0.0552940 FALSE 0.5228326 FALSE MAD2L1 NM_002358 NP_002349 downstream downstream 67714 NA NA NA 5 NA
7434 6616 0.36 FALSE
169 chr9 96111727 96112067 341
28.74277 9801.285 8986961 8987301 14 5407 2404.440 8.378496e+03 2.438416e+00 3.634896e+03 4.442815e-01 5.923754e+00 -1.174653e+01 -1.204777e+00 -1.420293e+01 -1.046596e+01 0.0553718 FALSE 0.5228326 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 3031 NA NA NA 5 NA
28215 17555 0.36 FALSE
170 chr1 183585783 183586083 301
32.46501 9771.968 24772610 24772910 31 3424 4080.118 1.297081e+04 4.075748e+01 7.381470e+03 1.674419e+00 5.872093e+00 -8.313989e+00 -8.132889e-01 -1.291932e+01 -1.110911e+01 0.0556831 FALSE 0.5228326 FALSE ARPC5 NM_001270439 NM_005717 NP_001257368 NP_005708 downstream downstream 18993 NA NA NA 4 NA
9748 8127 0.36 FALSE
171 chr2 67563374 67563711 338
28.75356 9718.702 7288186 7288523 17 8129 2772.069 1.289273e+04 1.677515e+00 9.637041e+02 1.964497e+00 2.662722e-01 -1.290795e+01 -3.741824e+00 -1.268011e+01 -1.556330e+01 0.0560722 FALSE 0.5228326 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 60731 NA NA NA 6 NA
13091 12589 0.36 FALSE
172 chr2 189849486 189849688 203
47.75536 9694.339 20118885 20119087 41 27987 31040.112 2.766010e+00 2.495216e+04 1.123153e+00 1.302420e+05 2.487685e+00 1.313907e+01 -1.300252e+00 1.552303e+01 -1.530026e-01 0.0561500 FALSE 0.5228326 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 10387 inside exon 0 2 51 inside transcription region
38373 37284 0.36 FALSE
173 chr8 114524388 114524622 235
40.91917 9616.004 10925045 10925279 24 2224 8596.909 2.479842e+04 1.073617e+01 1.816013e+04 1.310851e+01 2.148936e+00 -1.117355e+01 -4.494735e-01 -1.088553e+01 -1.349434e+01 0.0573952 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 75146 NA NA NA 71 NA
1214083 1212083 0.36 FALSE
174 chr1 222150302 222150534 233
40.68719 9480.114 28572595 28572827 39 8614 9823.109 1.895463e+04 8.763519e+01 3.005749e+04 8.090129e-01 1.497639e+01 -7.756824e+00 6.651742e-01 -1.451603e+01 -1.030564e+01 0.0587182 FALSE 0.5228326 FALSE DUSP10 NM_007207 NM_144728 NM_144729 NP_009138 NP_653329 NP_653330 upstream upstream 234786 NA NA NA 4 NA
40752 37332 0.36 FALSE
175 chr9 85501959 85502238 280
33.80580 9465.625 7688936 7689215 9 2367 4375.700 1.616701e+04 1.239821e+01 5.688286e+03 7.214286e+00 3.596429e+00 -1.034870e+01 -1.506987e+00 -1.112991e+01 -1.213420e+01 0.0589517 FALSE 0.5228326 FALSE RASEF NM_152573 NP_689786 XM_005251730 XM_005251731 XP_005251787 XP_005251788 downstream downstream 175805 NA NA NA 17 NA
83543 80190 0.36 FALSE
176 chr16 13449979 13450338 360
26.21657 9437.965 2744303 2744662 5 5109 1764.109 6.152786e+03 6.333333e-01 2.666149e+03 1.361111e-01 8.416667e-01 -1.324599e+01 -1.206483e+00 -1.546417e+01 -1.283570e+01 0.0590295 FALSE 0.5228326 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 454502 NA NA NA 5 NA
338796 333344 0.36 FALSE
177 chr6 6028378 6028633 256
36.63690 9379.045 725333 725588 1 256 6528.202 2.155446e+04 3.594531e+01 1.103030e+04 2.958984e+00 1.734180e+01 -9.227967e+00 -9.665145e-01 -1.283060e+01 -1.027952e+01 0.0594965 FALSE 0.5228326 FALSE NRN1 NM_001278710 NM_001278711 NM_016588 NP_001265639 NP_001265640 NP_057672 XM_006715106 XM_006715107 XP_006715169 XP_006715170 upstream upstream 20745 NA NA NA 3 NA
9400 7773 0.36 FALSE
178 chr8 115296467 115296742 276
33.91086 9359.398 10966474 10966749 26 5529 3749.466 1.391326e+04 0.000000e+00 4.834067e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -1.525152e+00 -1.000000e+100 -1.000000e+100 0.0596521 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 847225 NA NA NA 71 NA
1214083 1212083 0.36 FALSE
179 chr13 51749917 51750205 289
32.19980 9305.742 3860752 3861040 6 5837 3247.074 7.748125e+03 3.425606e-01 8.486901e+03 0.000000e+00 0.000000e+00 -1.446520e+01 1.313908e-01 -1.000000e+100 -1.000000e+100 0.0601969 FALSE 0.5228326 FALSE LINC00371 NR_102431 NR_102432 NA NA 0 NA NA NA 5 NA
0 0 0.36 FALSE
180 chr3 78634578 78634802 225
41.33894 9301.261 8717328 8717552 16 1246 8458.931 3.168996e+04 2.372444e+01 1.058052e+04 2.244444e-01 2.244444e-01 -1.038344e+01 -1.582615e+00 -1.710731e+01 -1.710731e+01 0.0601969 FALSE 0.5228326 FALSE ROBO1 NM_001145845 NM_002941 NM_133631 NP_001139317 NP_002932 NP_598334 XM_006713276 XM_006713277 XM_006713278 XP_006713339 XP_006713340 XP_006713341 downstream downstream 103120 NA NA NA 23 NA
91534 60790 0.36 FALSE
181 chrX 115951834 115952085 252
36.90650 9300.439 9407387 9407638 26 5174 5575.753 1.620834e+04 1.513690e+01 1.165228e+04 2.003968e-01 2.799603e+00 -1.006445e+01 -4.761239e-01 -1.630352e+01 -1.249923e+01 0.0601969 FALSE 0.5228326 FALSE CT83 NM_001017978 NP_001017978 upstream upstream 357640 NA NA NA 2 NA
1341 1109 0.36 FALSE
182 chr8 133097951 133098147 197
46.48821 9158.176 12343759 12343955 37 5510 11130.019 2.756772e+04 2.380711e+00 2.807856e+04 0.000000e+00 1.439086e+00 -1.349930e+01 2.648870e-02 -1.000000e+100 -1.422554e+01 0.0612086 FALSE 0.5228326 FALSE HHLA1 NM_001145095 NM_005712 NP_001138567 inside intron inside 19365 inside intron -1753 9 16 inside transcription region
43779 41270 0.36 FALSE
183 chr6 132225828 132226114 287
31.90077 9155.521 13973231 13973517 41 4872 3258.073 1.174632e+04 2.109756e+00 4.539469e+03 0.000000e+00 2.463415e+00 -1.244285e+01 -1.371614e+00 -1.000000e+100 -1.221926e+01 0.0612086 FALSE 0.5228326 FALSE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 96672 NA NA NA 25 NA
87139 82475 0.36 FALSE
184 chr20 36757358 36757691 334
27.31890 9124.511 4128075 4128408 5 1818 7189.699 2.022455e+01 1.113601e+04 1.766617e+01 2.475453e+04 2.006287e+01 9.104909e+00 -1.951186e-01 1.025737e+01 -1.157940e-02 0.0614421 FALSE 0.5228326 FALSE TGM2 NM_004613 NM_198951 NP_004604 NP_945189 inside exon inside 36009 inside exon 0 12 12 3'UTR
36836 34979 0.36 FALSE
185 chr15 35085446 35085770 325
27.86645 9056.597 1977601 1977925 1 5287 10644.072 2.417246e+02 4.958842e+04 3.051491e+03 2.136923e+00 3.365846e+02 7.680495e+00 3.658078e+00 -6.821686e+00 4.776048e-01 0.0616756 FALSE 0.5228326 FALSE ACTC1 NM_005159 NP_005150 inside exon inside 2157 inside exon 0 3 7 inside transcription region
7630 4396 0.36 FALSE
186 chr11 27653248 27653510 263
34.38575 9043.452 3884580 3884842 11 5437 4682.775 1.487039e+04 1.736122e+01 8.519312e+03 5.946768e+00 8.688213e-01 -9.742358e+00 -8.036333e-01 -1.128805e+01 -1.406302e+01 0.0616756 FALSE 0.5228326 FALSE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.36 FALSE
187 chr18 54085755 54085974 220
41.01858 9024.087 4710649 4710868 5 3207 7994.013 2.280833e+04 1.551364e+01 1.714300e+04 1.363636e-01 3.086364e+00 -1.052181e+01 -4.119409e-01 -1.735174e+01 -1.285136e+01 0.0617534 FALSE 0.5228326 FALSE TXNL1 NM_004786 NP_004777 NR_024546 XM_006722580 XM_006722581 XP_006722643 XP_006722644 XR_430086 downstream downstream 220296 NA NA NA 8 NA
36217 35413 0.36 FALSE
188 chr9 96114728 96114942 215
41.96411 9022.283 8989962 8990176 14 5407 7540.959 2.827816e+04 3.655814e+00 9.422979e+03 0.000000e+00 0.000000e+00 -1.291721e+01 -1.585433e+00 -1.000000e+100 -1.000000e+100 0.0617534 FALSE 0.5228326 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 6032 NA NA NA 5 NA
28215 17555 0.36 FALSE
189 chr2 188905017 188905321 305
29.39468 8965.378 20032156 20032460 39 482 3224.548 4.844734e+03 4.838197e+01 1.122902e+04 6.000000e-01 0.000000e+00 -6.645804e+00 1.212743e+00 -1.297917e+01 -1.000000e+100 0.0622203 FALSE 0.5228326 FALSE GULP1 NM_001252668 NM_001252669 NM_016315 NP_001239597 NP_001239598 NP_057399 NR_045562 NR_045563 XM_006712580 XM_006712581 XM_006712582 XM_006712583 XM_006712584 XM_006712585 XM_006712586 XM_006712587 XM_006712588 XM_006712589 XM_006712590 XM_006712591 XP_006712643 XP_006712644 XP_006712645 XP_006712646 XP_006712647 XP_006712648 XP_006712649 XP_006712650 XP_006712651 XP_006712652 XP_006712653 XP_006712654 upstream upstream 251075 NA NA NA 7 NA
250443 63720 0.36 FALSE
190 chr9 76702939 76703243 305
29.36740 8957.057 7023919 7024223 5 5530 2689.068 9.124679e+03 1.454098e+00 4.313995e+03 7.655738e-01 4.444262e+00 -1.261543e+01 -1.080749e+00 -1.354094e+01 -1.100361e+01 0.0622981 FALSE 0.5228326 FALSE RORB NM_006914 NP_008845 upstream upstream 409009 NA NA NA 10 NA
189865 187641 0.36 FALSE
191 chr19 54336134 54336434 301
29.49213 8877.132 14737360 14737660 10 5816 2675.779 1.080562e+04 1.481063e+01 2.558468e+03 0.000000e+00 0.000000e+00 -9.510933e+00 -2.078429e+00 -1.000000e+100 -1.000000e+100 0.0633099 FALSE 0.5228326 FALSE NLRP12 NM_001277126 NM_001277129 NM_033297 NM_144687 NP_001264055 NP_001264058 NP_653288 upstream upstream 8477 NA NA NA 10 NA
30802 30125 0.36 FALSE
192 chr4 88854138 88854467 330
26.87453 8868.594 8288618 8288947 19 5968 2102.881 6.287276e+03 2.767273e+01 4.199005e+03 2.984848e-01 1.530303e-01 -7.827826e+00 -5.823877e-01 -1.436249e+01 -1.532633e+01 0.0633877 FALSE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 42335 NA NA NA 7 NA
7761 6000 0.36 FALSE
193 chr16 9766930 9767216 287
30.89179 8865.943 2220397 2220683 4 8636 3465.800 1.523754e+04 5.982578e+00 2.084115e+03 8.153310e-01 5.505226e-01 -1.131457e+01 -2.870123e+00 -1.418988e+01 -1.475647e+01 0.0633877 FALSE 0.5228326 FALSE GRIN2A NM_000833 NM_001134407 NM_001134408 NP_000824 NP_001127879 NP_001127880 XM_005255267 XM_005255268 XP_005255324 XP_005255325 downstream downstream 509047 NA NA NA 13 NA
428998 417262 0.36 FALSE
194 chr2 8012994 8013299 306
28.85031 8828.195 586739 587044 2 5921 3228.958 8.630928e+03 3.024673e+01 7.471877e+03 8.251634e-01 1.091340e+01 -8.156593e+00 -2.080449e-01 -1.335255e+01 -9.627271e+00 0.0637768 FALSE 0.5228326 FALSE LINC00298 NR_015405 NA NA 0 NA NA NA 4 NA
0 0 0.36 FALSE
195 chr4 120920468 120920761 294
29.97391 8812.329 11517188 11517481 33 5835 2654.847 9.504044e+03 2.610544e+00 3.767452e+03 0.000000e+00 1.275510e-01 -1.182998e+01 -1.334952e+00 -1.000000e+100 -1.618518e+01 0.0639324 FALSE 0.5228326 FALSE MAD2L1 NM_002358 NP_002349 downstream downstream 67252 NA NA NA 5 NA
7434 6616 0.36 FALSE
196 chrX 86939753 86940059 307
28.49616 8748.322 6794027 6794333 11 4336 2260.241 7.046248e+03 2.257329e+00 4.252041e+03 0.000000e+00 6.579805e-01 -1.160802e+01 -7.286998e-01 -1.000000e+100 -1.338652e+01 0.0648663 FALSE 0.5228326 FALSE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 167038 NA NA NA 11 NA
152335 148637 0.36 FALSE
197 chr20 12734844 12735111 268
32.15181 8616.686 1446720 1446987 3 8409 3174.104 1.210019e+04 1.061567e+00 3.769271e+03 0.000000e+00 0.000000e+00 -1.347655e+01 -1.682673e+00 -1.000000e+100 -1.000000e+100 0.0656446 FALSE 0.5228326 FALSE SPTLC3 NM_018327 NP_060797 XR_244218 upstream upstream 254516 NA NA NA 2 NA
41189 40087 0.36 FALSE
198 chr4 24505446 24505695 250
34.09952 8524.880 3124776 3125025 9 1356 3966.249 1.099132e+04 1.852600e+01 8.821200e+03 0.000000e+00 2.020000e-01 -9.212597e+00 -3.173176e-01 -1.000000e+100 -1.573165e+01 0.0664228 FALSE 0.5228326 FALSE MIR573 NR_030299 NA NA 0 NA NA NA 1 NA
0 0 0.36 FALSE
199 chr19 20269525 20269757 233
36.52052 8509.280 6363543 6363775 2 1721 6112.150 2.220310e+04 1.248069e+01 8.327509e+03 1.624464e+00 1.603219e+01 -1.079685e+01 -1.414805e+00 -1.373851e+01 -1.043557e+01 0.0666563 FALSE 0.5228326 FALSE ZNF486 NM_052852 NP_443084 upstream upstream 8266 NA NA NA 4 NA
33276 30771 0.36 FALSE
200 chr14 101193263 101193472 210
40.28070 8458.948 9355825 9356034 17 8209 15435.314 7.711905e+00 2.388095e+01 5.252381e+00 6.978024e+02 7.644192e+04 1.630701e+00 -5.541157e-01 6.499587e+00 1.327499e+01 0.0669676 FALSE 0.5228326 FALSE DLK1 NM_001032997 NM_003836 NP_003827 inside exon inside 61 inside exon 0 1 5 overlaps 5' UTR
8265 7827 0.36 FALSE
201 chr2 189874904 189875091 188
44.88912 8439.154 20140969 20141156 41 27987 23140.560 3.063830e+00 1.864658e+04 4.627660e-01 9.705108e+04 1.609043e+00 1.257129e+01 -2.726981e+00 1.495112e+01 -9.291337e-01 0.0672011 FALSE 0.5228326 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 35805 inside exon 0 49 51 inside transcription region
38373 37284 0.36 FALSE
202 chr4 17002655 17002912 258
32.65203 8424.224 2630795 2631052 6 5803 4300.266 1.755138e+04 1.100388e+01 3.934855e+03 0.000000e+00 4.089147e+00 -1.063936e+01 -2.157202e+00 -1.000000e+100 -1.206750e+01 0.0673567 FALSE 0.5228326 FALSE LDB2 NM_001130834 NM_001290 NP_001124306 NP_001281 XM_005248197 XM_005248198 XM_005248201 XM_005248202 XM_005248203 XM_005248205 XM_006713975 XM_006713976 XM_006713977 XM_006713978 XM_006713979 XM_006713980 XM_006713981 XM_006713982 XM_006713983 XM_006713984 XP_005248254 XP_005248255 XP_005248258 XP_005248259 XP_005248260 XP_005248262 XP_006714038 XP_006714039 XP_006714040 XP_006714041 XP_006714042 XP_006714043 XP_006714044 XP_006714045 XP_006714046 XP_006714047 upstream upstream 102231 NA NA NA 8 NA
397259 395842 0.36 FALSE
203 chr1 216321956 216322119 164
51.01474 8366.418 28158506 28158669 37 3091 17846.946 4.599412e+04 9.097561e+00 4.323120e+04 0.000000e+00 3.079268e-01 -1.230368e+01 -8.937640e-02 -1.000000e+100 -1.718850e+01 0.0679793 FALSE 0.5228326 FALSE USH2A NM_007123 NM_206933 NP_009054 NP_996816 inside intron inside 274619 inside intron -26475 21 72 inside transcription region
800502 796555 0.37 FALSE
204 chr1 113362803 113363087 285
29.23176 8331.052 16408742 16409026 26 285 4990.530 3.594146e+03 7.728293e+03 1.353586e+04 0.000000e+00 9.435439e+01 1.104501e+00 1.913065e+00 -1.000000e+100 -5.251416e+00 0.0681349 FALSE 0.5228326 FALSE SLC16A1 NM_001166496 NM_003051 NP_001159968 NP_003042 downstream downstream 135598 NA NA NA 5 NA
44215 15417 0.37 FALSE
205 chr13 43446228 43446507 280
29.65144 8302.403 2784417 2784696 5 6717 2420.129 7.645741e+03 9.428571e-01 4.453812e+03 0.000000e+00 1.482143e-01 -1.298533e+01 -7.796155e-01 -1.000000e+100 -1.565468e+01 0.0686019 FALSE 0.5228326 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 119900 NA NA NA 13 NA
105883 103915 0.37 FALSE
206 chrX 113836281 113836505 225
36.89764 8301.968 9203379 9203603 25 4367 4965.352 1.778489e+04 1.466889e+01 7.026753e+03 0.000000e+00 4.488889e-01 -1.024368e+01 -1.339722e+00 -1.000000e+100 -1.527393e+01 0.0686019 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 17730 inside intron 11768 2 7 5' UTR
326073 180632 0.37 FALSE
207 chr6 31132905 31133063 159
52.19864 8299.584 3900308 3900466 9 1641 21538.189 4.450317e+04 6.999057e+01 6.309882e+04 1.773585e+00 1.718868e+01 -9.312532e+00 5.037051e-01 -1.461495e+01 -1.133823e+01 0.0686019 FALSE 0.5228326 FALSE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 5388 inside exon 0 4 5 inside transcription region
6337 6019 0.37 FALSE
208 chr5 12665719 12665992 274
30.22452 8281.519 1280575 1280848 7 4264 3030.256 8.408047e+03 1.319343e+01 6.720814e+03 1.350365e+00 7.875912e+00 -9.315807e+00 -3.231349e-01 -1.260421e+01 -1.006011e+01 0.0686797 FALSE 0.5228326 FALSE LINC01194 NR_033383 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
209 chr5 126176936 126177252 317
26.09906 8273.401 11958133 11958449 23 5984 1841.655 7.403121e+03 5.520500e-02 1.804434e+03 0.000000e+00 6.640379e-01 -1.703297e+01 -2.036587e+00 -1.000000e+100 -1.344458e+01 0.0687575 FALSE 0.5228326 FALSE LMNB1 NM_001198557 NM_005573 NP_001185486 NP_005564 downstream downstream 64621 NA NA NA 11 NA
60397 58755 0.37 FALSE
210 chr2 217538023 217538319 297
27.76193 8245.293 23438970 23439266 55 6953 7724.775 9.464310e+01 1.231872e+04 1.190909e+01 1.513310e+04 1.106551e+04 7.024139e+00 -2.990434e+00 7.320995e+00 6.869357e+00 0.0693023 FALSE 0.5228326 FALSE IGFBP5 NM_000599 NP_000590 inside exon inside 21953 inside exon 0 4 4 3'UTR
23444 18024 0.37 FALSE
211 chr1 226413721 226414041 321
25.58215 8211.870 29406340 29406660 42 1568 4450.195 3.677414e+01 4.597819e+01 2.216110e+04 3.728972e+00 3.398754e+00 3.222580e-01 9.235122e+00 -3.301842e+00 -3.435614e+00 0.0697693 FALSE 0.5228326 FALSE MIXL1 NM_001282402 NM_031944 NP_001269331 NP_114150 close to 3' close to 3' 2338 NA NA NA 2 NA
2130 2130 0.37 FALSE
212 chr12 14859430 14859723 294
27.61399 8118.514 2902452 2902745 11 5086 2362.565 6.942406e+03 1.914966e+00 4.862403e+03 5.756803e+00 3.418367e-01 -1.182390e+01 -5.137663e-01 -1.023595e+01 -1.430984e+01 0.0708588 FALSE 0.5228326 FALSE GUCY2C NM_004963 NP_004954 upstream upstream 9911 NA NA NA 27 NA
83951 83331 0.37 FALSE
213 chr6 21362489 21362739 251
31.93808 8016.457 2102224 2102474 8 4726 3493.452 1.284376e+04 1.180876e+01 4.606683e+03 1.408367e+00 3.601594e+00 -1.008699e+01 -1.479267e+00 -1.315476e+01 -1.180014e+01 0.0719483 FALSE 0.5228326 FALSE CDKAL1 NM_017774 NP_060244 XM_006715127 XM_006715128 XP_006715190 XP_006715191 downstream downstream 827801 NA NA NA 16 NA
697946 684688 0.37 FALSE
214 chr5 107889986 107890205 220
36.40159 8008.350 10351842 10352061 18 2567 7760.347 2.006359e+04 7.490682e+01 1.863718e+04 1.099091e+01 1.507045e+01 -8.065267e+00 -1.063965e-01 -1.083405e+01 -1.037864e+01 0.0720261 FALSE 0.5228326 FALSE FBXL17 NM_001163315 NM_022824 NP_001156787 XM_005272048 XM_005272050 XP_005272105 XP_005272107 XR_427717 upstream upstream 172187 NA NA NA 9 NA
523065 519971 0.37 FALSE
215 chr3 115513104 115513358 255
31.39695 8006.223 11064308 11064562 21 5485 3230.134 1.148074e+04 6.488235e+00 4.658957e+03 7.921569e-01 3.692157e+00 -1.078910e+01 -1.301137e+00 -1.382307e+01 -1.160246e+01 0.0721040 FALSE 0.5228326 FALSE LSAMP NM_002338 NP_002329 XM_005247454 XM_006713638 XP_005247511 XP_006713701 downstream downstream 651027 NA NA NA 7 NA
643175 634714 0.37 FALSE
216 chr20 12323179 12323389 211
37.75472 7966.246 1420784 1420994 2 4153 5855.428 2.237594e+04 5.026066e+00 6.891945e+03 9.004739e-01 3.327014e+00 -1.212023e+01 -1.698965e+00 -1.460090e+01 -1.271543e+01 0.0725709 FALSE 0.5228326 FALSE BTBD3 NM_001282550 NM_001282551 NM_001282552 NM_001282554 NM_014962 NM_181443 NP_001269479 NP_001269480 NP_001269481 NP_001269483 NP_055777 NP_852108 XM_006723550 XM_006723551 XP_006723613 XP_006723614 downstream downstream 451702 NA NA NA 5 NA
35766 5207 0.37 FALSE
217 chr2 216790408 216790688 281
28.25847 7940.629 23212931 23213211 54 5522 2840.089 9.762528e+03 9.390747e+01 4.337651e+03 3.542705e+00 2.814947e+00 -6.699871e+00 -1.170341e+00 -1.142819e+01 -1.175993e+01 0.0728822 FALSE 0.5228326 FALSE MREG NM_018000 NP_060470 downstream downstream 87658 NA NA NA 5 NA
71032 68464 0.37 FALSE
218 chr9 99981566 99981792 227
34.75307 7888.946 9819334 9819560 16 5375 4743.908 1.677604e+04 1.389868e+01 6.923960e+03 2.002203e+00 3.640969e+00 -1.023724e+01 -1.276733e+00 -1.303253e+01 -1.216979e+01 0.0738161 FALSE 0.5228326 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.37 FALSE
219 chr15 78640269 78640559 291
27.08837 7882.716 8536201 8536491 7 291 11608.532 5.936156e+03 2.161340e+01 6.673309e+03 5.171821e-01 4.541107e+04 -8.101459e+00 1.688733e-01 -1.348657e+01 2.935443e+00 0.0740496 FALSE 0.5228326 FALSE CRABP1 NM_004378 NP_004369 inside exon inside 7603 inside exon 0 4 4 overlaps 3'UTR
7906 7548 0.37 FALSE
220 chr15 97416911 97417115 205
38.31219 7853.999 11244637 11244841 14 4991 7432.581 1.567696e+04 8.610488e+01 2.139984e+04 0.000000e+00 0.000000e+00 -7.508335e+00 4.489548e-01 -1.000000e+100 -1.000000e+100 0.0742052 FALSE 0.5228326 FALSE SPATA8 NM_173499 NP_775770 downstream downstream 90232 NA NA NA 3 NA
2166 1461 0.37 FALSE
221 chr8 98216307 98216524 218
36.00548 7849.195 9556990 9557207 21 3640 5486.013 2.011140e+04 8.509174e+00 7.299796e+03 2.793578e+00 7.564220e+00 -1.120671e+01 -1.462086e+00 -1.281361e+01 -1.137653e+01 0.0742830 FALSE 0.5228326 FALSE CPQ NM_016134 NP_057218 XM_005250755 XM_006716498 XP_005250812 XP_006716561 XR_428374 downstream downstream 558808 NA NA NA 8 NA
498223 358285 0.37 FALSE
222 chr7 120958823 120959023 201
38.91912 7822.743 13743739 13743939 19 3029 7246.172 2.710580e+04 2.347015e+01 9.098590e+03 2.057214e+00 9.427861e-01 -1.017356e+01 -1.574887e+00 -1.368562e+01 -1.481131e+01 0.0744387 FALSE 0.5228326 FALSE WNT16 NM_016087 NM_057168 NP_057171 NP_476509 upstream upstream 6398 NA NA NA 4 NA
15737 13929 0.37 FALSE
223 chrX 113701497 113701741 245
31.81697 7795.159 9174442 9174686 24 5710 3091.773 1.179843e+04 1.218367e+00 3.659053e+03 0.000000e+00 1.612245e-01 -1.324136e+01 -1.689053e+00 -1.000000e+100 -1.615916e+01 0.0751391 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 upstream upstream 116810 NA NA NA 6 NA
326073 180632 0.37 FALSE
224 chr8 115308506 115308756 251
30.97772 7775.408 10978513 10978763 27 1886 2943.870 1.216366e+04 2.011952e-01 2.555492e+03 0.000000e+00 0.000000e+00 -1.588362e+01 -2.250904e+00 -1.000000e+100 -1.000000e+100 0.0753726 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 859264 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
225 chr4 88843325 88843546 222
34.85863 7738.617 8277866 8278087 18 5462 4410.020 1.363192e+04 3.794369e+01 8.380005e+03 2.297297e-01 0.000000e+00 -8.488913e+00 -7.019660e-01 -1.585669e+01 -1.000000e+100 0.0760730 FALSE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 53256 NA NA NA 7 NA
7761 6000 0.37 FALSE
226 chr5 12664633 12664851 219
35.07567 7681.571 1279489 1279707 7 4264 4799.825 1.315305e+04 3.839041e+01 1.080657e+04 8.904110e-01 2.305936e-01 -8.420435e+00 -2.834887e-01 -1.385057e+01 -1.579968e+01 0.0766956 FALSE 0.5228326 FALSE LINC01194 NR_033383 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
227 chr3 54668488 54668704 217
35.25594 7650.539 7021729 7021945 12 7966 4765.505 1.482357e+04 5.944700e+00 8.997862e+03 0.000000e+00 1.451613e-01 -1.128400e+01 -7.202392e-01 -1.000000e+100 -1.663988e+01 0.0770847 FALSE 0.5228326 FALSE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.37 FALSE
228 chr10 53797222 53797512 291
26.23934 7635.647 5494842 5495132 7 5594 1767.964 6.131737e+03 2.079038e+00 2.706005e+03 0.000000e+00 0.000000e+00 -1.152616e+01 -1.180131e+00 -1.000000e+100 -1.000000e+100 0.0773960 FALSE 0.5228326 FALSE PRKG1 NM_001098512 NM_006258 NP_001091982 NP_006249 XM_005269970 XM_005269971 XM_005269972 XP_005270027 XP_005270028 XP_005270029 inside intron inside 962988 inside intron 16732 6 18 inside transcription region
1223876 1219309 0.37 FALSE
229 chr3 98115654 98115897 244
31.26662 7629.054 9327743 9327986 17 244 3180.016 9.699439e+03 1.954508e+01 6.180268e+03 4.918033e-01 3.360656e-01 -8.954952e+00 -6.502317e-01 -1.426753e+01 -1.481687e+01 0.0773960 FALSE 0.5228326 FALSE OR5K3 NM_001005516 NP_001005516 downstream downstream 6144 NA NA NA 1 NA
965 965 0.37 FALSE
230 chr2 67562519 67562819 301
25.30012 7615.335 7287331 7287631 17 8129 1918.979 8.976148e+03 0.000000e+00 6.171312e+02 1.616279e+00 0.000000e+00 -1.000000e+100 -3.862447e+00 -1.243920e+01 -1.000000e+100 0.0779408 FALSE 0.5228326 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 61623 NA NA NA 6 NA
13091 12589 0.37 FALSE
231 chr1 231967939 231968127 189
40.15767 7589.800 30376105 30376293 47 904 7797.052 2.854665e+04 2.658466e+01 1.040302e+04 1.896825e+00 7.119048e+00 -1.006851e+01 -1.456319e+00 -1.387745e+01 -1.196935e+01 0.0782521 FALSE 0.5228326 FALSE DISC1 NM_001012957 NM_001012958 NM_001012959 NM_001039383 NM_001164537 NM_001164538 NM_001164539 NM_001164540 NM_001164541 NM_001164542 NM_001164544 NM_001164545 NM_001164546 NM_001164547 NM_001164548 NM_001164549 NM_001164550 NM_001164551 NM_001164552 NM_001164553 NM_001164554 NM_001164555 NM_001164556 NM_018662 NP_001012975 NP_001012976 NP_001012977 NP_001158009 NP_001158010 NP_001158011 NP_001158012 NP_001158013 NP_001158014 NP_001158016 NP_001158017 NP_001158018 NP_001158019 NP_001158020 NP_001158021 NP_001158022 NP_001158023 NP_001158024 NP_001158025 NP_001158026 NP_001158027 NP_001158028 NP_061132 inside intron inside 205378 inside intron -13676 7 11 inside transcription region
414458 409963 0.37 FALSE
232 chr12 79938637 79938832 196
38.54134 7554.102 10242610 10242805 22 5631 6468.906 2.148027e+04 3.980357e+01 1.082193e+04 2.576531e-01 2.270408e+00 -9.075899e+00 -9.890549e-01 -1.634722e+01 -1.320777e+01 0.0791081 FALSE 0.5228326 FALSE PAWR NM_002583 NP_002574 XM_006719435 XM_006719436 XP_006719498 XP_006719499 downstream downstream 145958 NA NA NA 7 NA
99045 97637 0.37 FALSE
233 chr20 36758105 36758386 282
26.64619 7514.225 4128822 4129103 5 1818 6813.113 1.472518e+01 1.045410e+04 1.493440e+01 2.355679e+04 2.501064e+01 9.471569e+00 2.035400e-02 1.064364e+01 7.642569e-01 0.0796529 FALSE 0.5228326 FALSE TGM2 NM_004613 NM_198951 NP_004604 NP_945189 inside exon inside 35314 inside exon 0 12 12 3'UTR
36836 34979 0.37 FALSE
234 chrX 110790954 110791195 242
30.83038 7460.951 8810380 8810621 22 4520 2892.391 1.062599e+04 3.743802e+00 3.830085e+03 3.925620e-01 1.741736e+00 -1.147081e+01 -1.472150e+00 -1.472432e+01 -1.257478e+01 0.0801198 FALSE 0.5228326 FALSE LINC00890 NR_033974 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
235 chr4 24505768 24506007 240
30.96204 7430.891 3125098 3125337 9 1356 3175.939 1.169215e+04 1.931458e+01 4.165494e+03 2.104167e-01 2.527083e+00 -9.241634e+00 -1.488981e+00 -1.576193e+01 -1.217578e+01 0.0806646 FALSE 0.5228326 FALSE MIR573 NR_030299 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
236 chr12 10489821 10490039 219
33.89933 7423.954 2153162 2153380 7 3160 4281.666 1.343127e+04 4.100457e+00 7.963740e+03 0.000000e+00 9.223744e+00 -1.167752e+01 -7.540774e-01 -1.000000e+100 -1.050796e+01 0.0807424 FALSE 0.5228326 FALSE KLRD1 NM_001114396 NM_002262 NM_007334 NP_001107868 NP_002253 NP_031360 XM_005253363 XM_006719065 XM_006719066 XM_006719067 XM_006719068 XP_005253420 XP_006719128 XP_006719129 XP_006719130 XP_006719131 downstream downstream 32771 NA NA NA 7 NA
12800 6715 0.37 FALSE
237 chr4 79637334 79637547 214
34.63061 7410.951 7319107 7319320 15 3968 4995.028 1.801615e+04 8.852804e+00 6.940271e+03 1.976635e+00 7.883178e+00 -1.099087e+01 -1.376227e+00 -1.315396e+01 -1.115823e+01 0.0808203 FALSE 0.5228326 FALSE LINC01094 NR_038303 NR_038304 NR_038305 NR_038306 NR_038307 NR_038308 NA NA 0 NA NA NA 5 NA
0 0 0.37 FALSE
238 chr8 115307736 115307988 253
29.26377 7403.734 10977743 10977995 27 1886 2448.929 9.950267e+03 0.000000e+00 2.294377e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -2.116632e+00 -1.000000e+100 -1.000000e+100 0.0808203 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 858494 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
239 chr2 76800884 76801101 218
33.94134 7399.213 8866468 8866685 20 4047 4086.634 1.295281e+04 2.900688e+01 7.450087e+03 3.830275e-01 8.853211e-01 -8.802654e+00 -7.979356e-01 -1.504546e+01 -1.383670e+01 0.0809759 FALSE 0.5228326 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 downstream downstream 948401 NA NA NA 4 NA
774652 772976 0.37 FALSE
240 chr6 121944505 121944749 245
30.18354 7394.967 13049963 13050207 26 2940 3431.521 1.066780e+04 1.430612e+01 6.456935e+03 6.730612e+00 1.182857e+01 -9.542415e+00 -7.243419e-01 -1.063024e+01 -9.816772e+00 0.0810537 FALSE 0.5228326 FALSE GJA1 NM_000165 NP_000156 downstream downstream 187760 NA NA NA 2 NA
14128 1148 0.37 FALSE
241 chr4 80477466 80477672 207
35.71306 7392.604 7391469 7391675 16 2580 4947.571 1.843585e+04 1.209662e+01 6.284150e+03 2.091787e+00 3.664251e+00 -1.057369e+01 -1.552725e+00 -1.310549e+01 -1.229671e+01 0.0811316 FALSE 0.5228326 FALSE LINC00989 NR_038826 NA NA 0 NA NA NA 4 NA
0 0 0.37 FALSE
242 chrX 124523605 124523869 265
27.89268 7391.561 10071756 10072020 30 5372 2095.298 5.991328e+03 1.128302e+00 4.484034e+03 0.000000e+00 0.000000e+00 -1.237451e+01 -4.180787e-01 -1.000000e+100 -1.000000e+100 0.0811316 FALSE 0.5228326 FALSE LOC100129520 NM_001195272 NP_001182201 XM_005262352 XP_005262409 downstream downstream 69636 NA NA NA 1 NA
2981 2981 0.37 FALSE
243 chr19 54335412 54335675 264
27.97005 7384.093 14736638 14736901 10 5816 2353.672 9.354430e+03 1.684659e+01 2.397085e+03 0.000000e+00 0.000000e+00 -9.117049e+00 -1.964368e+00 -1.000000e+100 -1.000000e+100 0.0812872 FALSE 0.5228326 FALSE NLRP12 NM_001277126 NM_001277129 NM_033297 NM_144687 NP_001264055 NP_001264058 NP_653288 upstream upstream 7755 NA NA NA 10 NA
30802 30125 0.37 FALSE
244 chr13 54844096 54844285 190
38.70708 7354.345 4372338 4372527 10 2340 6123.505 1.760921e+04 6.031579e+00 1.299867e+04 1.328947e+00 2.286842e+00 -1.151151e+01 -4.379657e-01 -1.369376e+01 -1.291069e+01 0.0815207 FALSE 0.5228326 FALSE MIR1297 NR_031628 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
245 chr9 93177564 93177767 204
36.01644 7347.353 8539777 8539980 13 5274 4599.017 1.663615e+04 3.171569e+00 6.355765e+03 0.000000e+00 0.000000e+00 -1.235684e+01 -1.388184e+00 -1.000000e+100 -1.000000e+100 0.0816763 FALSE 0.5228326 FALSE RP11-555F9.2 NM_001105317 NR_034157 downstream downstream 167261 NA NA NA 6 NA
120314 42211 0.37 FALSE
246 chr8 120122038 120122310 273
26.89892 7343.405 11214800 11215072 32 10012 1997.872 1.144689e+00 0.000000e+00 4.798535e-01 9.986328e+03 1.406593e+00 -1.000000e+100 -1.254289e+00 1.309078e+01 2.972501e-01 0.0817542 FALSE 0.5228326 FALSE COLEC10 NM_006438 NP_006429 XM_005250756 XP_005250813 downstream downstream 42614 NA NA NA 6 NA
39778 38909 0.37 FALSE
247 chrX 93954801 93955028 228
32.16157 7332.837 7074693 7074920 16 5905 3280.539 1.149912e+04 1.982456e+00 4.899654e+03 1.644737e-01 1.774123e+00 -1.250195e+01 -1.230772e+00 -1.609331e+01 -1.266213e+01 0.0819876 FALSE 0.5228326 FALSE FAM133A NM_001171109 NM_001171110 NM_001171111 NM_173698 NP_001164580 NP_001164581 NP_001164582 NP_775969 XM_006724641 XP_006724704 downstream downstream 1025789 NA NA NA 4 NA
38261 746 0.37 FALSE
248 chr9 76704283 76704525 243
30.04531 7301.010 7025263 7025505 5 5530 2911.704 8.219626e+03 2.756173e+01 6.310918e+03 0.000000e+00 4.156379e-01 -8.220263e+00 -3.812229e-01 -1.000000e+100 -1.427146e+01 0.0822211 FALSE 0.5228326 FALSE RORB NM_006914 NP_008845 upstream upstream 407727 NA NA NA 10 NA
189865 187641 0.37 FALSE
249 chr4 62632632 62632867 236
30.84561 7279.563 5878286 5878521 13 5422 2877.176 1.029293e+04 3.368644e+00 4.086803e+03 0.000000e+00 2.781780e+00 -1.157720e+01 -1.332609e+00 -1.000000e+100 -1.185336e+01 0.0827659 FALSE 0.5228326 FALSE LPHN3 NM_015236 NP_056051 XM_006714153 XM_006714154 XM_006714155 XM_006714156 XP_006714216 XP_006714217 XP_006714218 XP_006714219 inside intron inside 34160 inside intron -33360 1 6 inside transcription region
202269 202149 0.37 FALSE
250 chr1 222146939 222147146 208
34.81839 7242.225 28569744 28569951 39 8614 7348.296 2.158256e+04 5.972596e+01 1.505823e+04 1.569231e+01 2.527885e+01 -8.497292e+00 -5.193140e-01 -1.042559e+01 -9.737720e+00 0.0833885 FALSE 0.5228326 FALSE DUSP10 NM_007207 NM_144728 NM_144729 NP_009138 NP_653329 NP_653330 upstream upstream 231423 NA NA NA 4 NA
40752 37332 0.37 FALSE
251 chr9 90031239 90031497 259
27.94101 7236.723 8216956 8217214 12 5446 2352.681 6.822077e+03 7.598456e+00 4.929710e+03 2.277992e-01 3.791506e+00 -9.810289e+00 -4.687082e-01 -1.487016e+01 -1.081322e+01 0.0834663 FALSE 0.5228326 FALSE DAPK1 NM_001288729 NM_001288730 NM_001288731 NM_004938 NP_001275658 NP_001275659 NP_001275660 NP_004929 XM_005251757 XM_006716988 XP_005251814 XP_006717051 upstream upstream 81161 NA NA NA 26 NA
210891 208286 0.37 FALSE
252 chr4 1165640 1165862 223
32.43322 7232.608 494612 494834 1 5842 9533.140 3.475336e+01 1.810202e+02 2.318386e+00 4.736894e+04 7.866816e+01 2.380926e+00 -3.905960e+00 1.041257e+01 1.178627e+00 0.0835441 FALSE 0.5228326 FALSE SPON2 NM_001128325 NM_001199021 NM_012445 NP_001121797 NP_001185950 NP_036577 inside exon inside 36888 inside exon 0 4 8 overlaps 5' UTR
42029 4599 0.37 FALSE
253 chr9 96112260 96112501 242
29.81481 7215.183 8987494 8987735 14 5407 2551.674 9.363709e+03 4.173554e-01 3.394244e+03 0.000000e+00 0.000000e+00 -1.445352e+01 -1.463990e+00 -1.000000e+100 -1.000000e+100 0.0839332 FALSE 0.5228326 FALSE C9orf129 NM_001098808 NP_001092278 XM_006717117 XP_006717180 upstream upstream 3564 NA NA NA 5 NA
28215 17555 0.37 FALSE
254 chr13 66802303 66802540 238
30.29890 7211.138 4792562 4792799 18 4101 2902.363 8.616082e+03 2.440546e+01 5.870216e+03 1.617647e-01 9.474790e-01 -8.463684e+00 -5.536183e-01 -1.570085e+01 -1.315065e+01 0.0840111 FALSE 0.5228326 FALSE PCDH9 NM_020403 NM_203487 NP_065136 NP_982354 XM_005266406 XM_005266407 XM_005266408 XP_005266463 XP_005266464 XP_005266465 NA NA 0 NA NA NA 4 NA
0 0 0.37 FALSE
255 chrX 97779864 97780069 206
34.98567 7207.048 7294932 7295137 19 4431 4386.265 1.629010e+04 1.618932e+00 5.637638e+03 2.014563e-01 1.759709e+00 -1.329667e+01 -1.530833e+00 -1.630317e+01 -1.317637e+01 0.0840111 FALSE 0.5228326 FALSE DIAPH2 NM_006729 NM_007309 NP_006720 NP_009293 downstream downstream 1840202 NA NA NA 27 NA
915935 914258 0.37 FALSE
256 chr2 77324835 77325079 245
29.38297 7198.827 8912388 8912632 22 2098 2742.942 1.147011e+04 1.012449e+01 2.232378e+03 0.000000e+00 2.102041e+00 -1.014581e+01 -2.361226e+00 -1.000000e+100 -1.241380e+01 0.0841667 FALSE 0.5228326 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 424423 inside intron 348793 4 4 inside transcription region
774652 772976 0.37 FALSE
257 chr12 86272123 86272347 225
31.85983 7168.462 10641366 10641590 24 4217 5780.449 7.360873e+03 5.539778e+01 2.146773e+04 0.000000e+00 1.824444e+01 -7.053905e+00 1.544221e+00 -1.000000e+100 -8.656276e+00 0.0847893 FALSE 0.5228326 FALSE NTS NM_006183 NP_006174 inside exon inside 4050 inside exon 0 3 4 inside transcription region
8697 7971 0.37 FALSE
258 chr4 88846274 88846448 175
40.90325 7158.068 8280815 8280989 18 5462 8001.927 3.028034e+04 3.063143e+01 9.698086e+03 2.885714e-01 2.885714e-01 -9.949153e+00 -1.642610e+00 -1.667909e+01 -1.667909e+01 0.0848671 FALSE 0.5228326 FALSE SPP1 NM_000582 NM_001040058 NM_001040060 NM_001251829 NM_001251830 NP_000573 NP_001035147 NP_001035149 NP_001238758 NP_001238759 upstream upstream 50354 NA NA NA 7 NA
7761 6000 0.37 FALSE
259 chr9 126795175 126795439 265
26.95742 7143.716 12931788 12932052 23 537 3586.362 8.847170e+00 7.641509e+00 2.310000e+01 3.283019e-01 1.789189e+04 -2.113584e-01 1.384605e+00 -4.752121e+00 1.098180e+01 0.0849449 FALSE 0.5228326 FALSE LHX2 NM_004789 NP_004780 XM_006717323 XP_006717386 inside exon inside 21286 inside exon 0 5 5 3'UTR
21553 20358 0.37 FALSE
260 chr9 99977170 99977407 238
29.94196 7126.188 9814938 9815175 16 5375 2587.063 9.551189e+03 1.140756e+00 3.382874e+03 0.000000e+00 1.134454e-01 -1.303147e+01 -1.497431e+00 -1.000000e+100 -1.636139e+01 0.0851784 FALSE 0.5228326 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.37 FALSE
261 chrX 91360586 91360804 219
32.49699 7116.840 6907867 6908085 13 5524 3435.335 1.146998e+04 1.170320e+01 5.692162e+03 1.152968e+00 1.673516e+00 -9.936745e+00 -1.010814e+00 -1.328022e+01 -1.274269e+01 0.0855675 FALSE 0.5228326 FALSE PCDH11X NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969 NP_001161832 NP_001161833 NP_001161834 NP_001161835 NP_055337 NP_116749 NP_116750 NP_116751 inside intron inside 270126 inside intron 95570 3 7 inside transcription region
787768 632811 0.37 FALSE
262 chr1 223201713 223201891 179
39.67926 7102.587 28750903 28751081 40 5414 7165.327 1.521217e+04 4.634078e+01 2.056812e+04 0.000000e+00 0.000000e+00 -8.358728e+00 4.351841e-01 -1.000000e+100 -1.000000e+100 0.0858788 FALSE 0.5228326 FALSE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 213282 NA NA NA 10 NA
190906 63148 0.37 FALSE
263 chr16 9767585 9767863 279
25.44638 7099.541 2221051 2221329 4 8636 2047.991 9.911339e+03 0.000000e+00 3.286147e+02 0.000000e+00 0.000000e+00 -1.000000e+100 -4.914611e+00 -1.000000e+100 -1.000000e+100 0.0859567 FALSE 0.5228326 FALSE GRIN2A NM_000833 NM_001134407 NM_001134408 NP_000824 NP_001127879 NP_001127880 XM_005255267 XM_005255268 XP_005255324 XP_005255325 downstream downstream 508400 NA NA NA 13 NA
428998 417262 0.37 FALSE
264 chrX 113840052 113840245 194
36.54454 7089.640 9207150 9207343 25 4367 4693.056 1.671687e+04 1.007732e+00 6.745608e+03 0.000000e+00 1.796392e+00 -1.401790e+01 -1.309284e+00 -1.000000e+100 -1.318391e+01 0.0860345 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 21501 inside intron 8028 2 7 5' UTR
326073 180632 0.37 FALSE
265 chr2 189839126 189839294 169
41.89566 7080.366 20108647 20108815 40 169 19175.576 2.644970e+00 1.531324e+04 9.112426e-01 8.055997e+04 1.109468e+00 1.249924e+01 -1.537344e+00 1.489452e+01 -1.253384e+00 0.0860345 FALSE 0.5228326 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 27 inside exon 0 1 51 overlaps 5' UTR
38373 37284 0.37 FALSE
266 chr2 5146401 5146611 211
33.49665 7067.793 429033 429243 1 5646 4202.828 9.992178e+03 3.174882e+01 1.098957e+04 4.028436e-01 2.393365e-01 -8.297953e+00 1.372643e-01 -1.459829e+01 -1.534947e+01 0.0861901 FALSE 0.5228326 FALSE AC022311.1 NR_034134 NA NA 0 NA NA NA 5 NA
0 0 0.37 FALSE
267 chr4 95217310 95217530 221
31.80013 7027.829 9016819 9017039 28 3437 3996.669 1.083625e+04 2.501357e+01 9.103652e+03 1.454072e+01 3.884615e+00 -8.758939e+00 -2.513488e-01 -9.541551e+00 -1.144581e+01 0.0869684 FALSE 0.5228326 FALSE HPGDS NM_014485 NP_055300 XM_005262932 XP_005262989 downstream downstream 46497 NA NA NA 6 NA
44320 35149 0.37 FALSE
268 chr2 154391810 154392033 224
31.37008 7026.899 16192901 16193124 27 224 3186.591 1.148920e+04 4.732143e+00 4.433190e+03 2.450893e+00 3.379464e+00 -1.124550e+01 -1.373862e+00 -1.219468e+01 -1.173120e+01 0.0869684 FALSE 0.5228326 FALSE RPRM NM_019845 NP_062819 upstream upstream 56488 NA NA NA 1 NA
1470 329 0.37 FALSE
269 chrX 115946912 115947103 192
36.59781 7026.779 9402465 9402656 26 5174 7926.279 2.466741e+04 4.769271e+01 1.488091e+04 1.443490e+01 2.094531e+01 -9.014622e+00 -7.291430e-01 -1.073883e+01 -1.020176e+01 0.0869684 FALSE 0.5228326 FALSE CT83 NM_001017978 NP_001017978 upstream upstream 352718 NA NA NA 2 NA
1341 1109 0.37 FALSE
270 chr14 41985179 41985390 212
33.12859 7023.261 2401780 2401991 4 5702 4195.230 1.139762e+04 3.897406e+01 9.536646e+03 2.382075e-01 2.676887e+00 -8.192002e+00 -2.571781e-01 -1.554615e+01 -1.205589e+01 0.0869684 FALSE 0.5228326 FALSE LRFN5 NM_152447 NP_689660 XM_005267369 XP_005267426 XR_429293 upstream upstream 91374 NA NA NA 6 NA
296988 17549 0.37 FALSE
271 chr6 132227655 132227860 206
33.98093 7000.072 13975058 13975263 41 4872 4119.336 1.573334e+04 1.274757e+01 4.848653e+03 2.451456e-01 1.691748e+00 -1.026939e+01 -1.698169e+00 -1.596983e+01 -1.318302e+01 0.0872797 FALSE 0.5228326 FALSE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 98499 NA NA NA 25 NA
87139 82475 0.37 FALSE
272 chr9 99980400 99980589 190
36.75697 6983.825 9818168 9818357 16 5375 5238.502 1.970031e+04 1.905263e+00 6.489832e+03 2.263158e-01 2.421053e-01 -1.333594e+01 -1.601965e+00 -1.640952e+01 -1.631222e+01 0.0875131 FALSE 0.5228326 FALSE LOC100499484 NR_036526 NA NA 0 NA NA NA 16 NA
0 0 0.37 FALSE
273 chr16 60115984 60116153 170
41.04168 6977.086 7943451 7943620 8 2164 7966.714 2.992475e+04 2.481765e+01 9.883406e+03 5.941176e-01 0.000000e+00 -1.023576e+01 -1.598259e+00 -1.562023e+01 -1.000000e+100 0.0875910 FALSE 0.5228326 FALSE APOOP5 NR_028471 upstream upstream 326889 NA NA NA 1 NA
1050 308 0.37 FALSE
274 chr1 99978235 99978446 212
32.87066 6968.580 14809011 14809222 24 3707 4033.441 1.388530e+04 1.210142e+01 6.257724e+03 1.667453e+00 1.041274e+01 -1.016417e+01 -1.149848e+00 -1.302362e+01 -1.038099e+01 0.0879801 FALSE 0.5228326 FALSE PALMD NM_017734 NP_060204 upstream upstream 132985 NA NA NA 8 NA
48666 47744 0.37 FALSE
275 chr4 1166332 1166562 231
30.10904 6955.189 495304 495534 1 5842 6605.055 3.485281e+01 8.252597e+01 3.095238e+00 3.278645e+04 1.183528e+02 1.243573e+00 -3.493153e+00 9.877609e+00 1.763747e+00 0.0882135 FALSE 0.5228326 FALSE SPON2 NM_001128325 NM_001199021 NM_012445 NP_001121797 NP_001185950 NP_036577 overlaps exon upstream inside 36188 overlaps exon upstream 0 3 8 5' UTR
42029 4599 0.37 FALSE
276 chr4 1165051 1165274 224
31.04757 6954.656 494023 494246 1 5842 6699.192 2.684598e+01 1.257656e+02 2.919643e+00 3.328424e+04 5.618750e+01 2.227960e+00 -3.200842e+00 1.027592e+01 1.065543e+00 0.0882135 FALSE 0.5228326 FALSE SPON2 NM_001128325 NM_001199021 NM_012445 NP_001121797 NP_001185950 NP_036577 inside exon inside 0 inside exon 0 1 2 overlaps 5' UTR
4551 887 0.37 FALSE
277 chr8 128446554 128446776 223
31.16929 6950.753 11930181 11930403 33 4738 3693.194 1.128227e+04 1.539238e+01 7.149370e+03 1.562108e+01 3.318386e+00 -9.517625e+00 -6.581689e-01 -9.496347e+00 -1.173129e+01 0.0883692 FALSE 0.5228326 FALSE CASC8 NR_024393 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
278 chr2 64484474 64484730 257
27.01598 6943.107 6921723 6921979 15 2909 2295.901 7.691543e+03 5.982490e+00 3.768858e+03 1.270428e+00 1.185214e+01 -1.032831e+01 -1.029146e+00 -1.256374e+01 -9.341982e+00 0.0887583 FALSE 0.5228326 FALSE LINC00309 NR_033837 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
279 chr16 65310126 65310326 201
34.49416 6933.326 8146761 8146961 12 2881 3853.101 9.898995e+03 7.238806e-01 9.365789e+03 0.000000e+00 0.000000e+00 -1.373924e+01 -7.988160e-02 -1.000000e+100 -1.000000e+100 0.0889918 FALSE 0.5228326 FALSE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
280 chr8 68632345 68632544 200
34.58629 6917.258 6967296 6967495 9 200 4255.481 1.282383e+04 1.603500e+01 8.434897e+03 2.525000e-01 2.395000e+00 -9.643387e+00 -6.043842e-01 -1.563218e+01 -1.238651e+01 0.0896144 FALSE 0.5228326 FALSE CPA6 NM_001127445 NM_020361 NP_065094 inside intron inside 26076 inside intron -25705 1 8 inside transcription region
263103 262471 0.37 FALSE
281 chr8 120122338 120122593 256
26.63284 6818.007 11215100 11215355 32 10012 1939.823 6.992188e-01 0.000000e+00 7.539062e-01 9.695932e+03 1.730469e+00 -1.000000e+100 1.086413e-01 1.375935e+01 1.307347e+00 0.0920269 FALSE 0.5228326 FALSE COLEC10 NM_006438 NP_006429 XM_005250756 XP_005250813 downstream downstream 42914 NA NA NA 6 NA
39778 38909 0.37 FALSE
282 chr5 92930097 92930311 215
31.64646 6803.988 9129215 9129429 13 857 2452.977 9.325581e-01 2.304651e+00 2.348837e-01 8.843465e+03 3.417949e+03 1.305283e+00 -1.989247e+00 1.321113e+01 1.183965e+01 0.0921048 FALSE 0.5228326 FALSE NR2F1 NM_005654 NP_005645 downstream downstream 11054 NA NA NA 3 NA
10743 8818 0.37 FALSE
283 chrX 124523282 124523524 243
27.86085 6770.186 10071433 10071675 30 5372 2103.455 5.693156e+03 4.732510e-02 4.824072e+03 0.000000e+00 0.000000e+00 -1.687626e+01 -2.389773e-01 -1.000000e+100 -1.000000e+100 0.0928830 FALSE 0.5228326 FALSE LOC100129520 NM_001195272 NP_001182201 XM_005262352 XP_005262409 downstream downstream 69313 NA NA NA 1 NA
2981 2981 0.37 FALSE
284 chr14 99454807 99454989 183
36.96807 6765.157 9067028 9067210 15 4207 5619.062 2.151787e+04 9.478142e+00 6.563481e+03 4.644809e-01 4.013661e+00 -1.114864e+01 -1.713002e+00 -1.549956e+01 -1.238833e+01 0.0930386 FALSE 0.5228326 FALSE BCL11B NM_001282237 NM_001282238 NM_022898 NM_138576 NP_001269166 NP_001269167 NP_075049 NP_612808 downstream downstream 282833 NA NA NA 4 NA
102197 97067 0.37 FALSE
285 chrX 110790451 110790638 188
35.98405 6765.002 8809877 8810064 22 4520 4917.582 1.870336e+04 5.372340e+00 5.876902e+03 0.000000e+00 2.281915e+00 -1.176546e+01 -1.670170e+00 -1.000000e+100 -1.300076e+01 0.0930386 FALSE 0.5228326 FALSE LINC00890 NR_033974 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
286 chr1 222149070 222149236 167
40.49075 6761.955 28571571 28571737 39 8614 7858.734 2.198943e+04 2.336228e+01 1.727517e+04 5.000000e-01 5.206587e+00 -9.878414e+00 -3.481103e-01 -1.542452e+01 -1.204418e+01 0.0931165 FALSE 0.5228326 FALSE DUSP10 NM_007207 NM_144728 NM_144729 NP_009138 NP_653329 NP_653330 upstream upstream 233554 NA NA NA 4 NA
40752 37332 0.37 FALSE
287 chrX 86942042 86942292 251
26.85754 6741.244 6796316 6796566 11 4336 2085.219 7.464253e+03 2.449004e+01 2.936966e+03 0.000000e+00 3.864542e-01 -8.251659e+00 -1.345671e+00 -1.000000e+100 -1.423741e+01 0.0936612 FALSE 0.5228326 FALSE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 169327 NA NA NA 11 NA
152335 148637 0.37 FALSE
288 chr7 42910910 42911099 190
35.41586 6729.014 4863144 4863333 11 3821 4822.849 1.675131e+04 1.008947e+01 7.346600e+03 1.639474e+00 4.605263e+00 -1.069721e+01 -1.189125e+00 -1.331875e+01 -1.182870e+01 0.0942060 FALSE 0.5228326 FALSE C7orf25 NM_001099858 NM_024054 NP_001093328 NP_076959 XM_005249844 XP_005249901 downstream downstream 41052 NA NA NA 2 NA
3279 2432 0.37 FALSE
289 chr8 115257423 115257613 191
35.19273 6721.811 10959638 10959828 25 3330 4770.685 1.195051e+04 3.364136e+01 1.186719e+04 0.000000e+00 2.086387e+00 -8.472620e+00 -1.009410e-02 -1.000000e+100 -1.248378e+01 0.0945173 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 808181 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
290 chrX 113836074 113836222 149
45.11087 6721.519 9203172 9203320 25 4367 11994.303 4.722215e+04 2.654362e+00 1.273579e+04 8.687919e+00 2.231544e+00 -1.411881e+01 -1.890576e+00 -1.240817e+01 -1.436913e+01 0.0945173 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 17523 inside intron 12051 2 7 5' UTR
326073 180632 0.37 FALSE
291 chr2 12769181 12769393 213
31.45366 6699.630 1219658 1219870 4 3899 3962.683 1.208664e+04 1.168779e+01 7.697944e+03 7.021127e+00 1.012676e+01 -1.001419e+01 -6.508678e-01 -1.074942e+01 -1.022102e+01 0.0950621 FALSE 0.5228326 FALSE TRIB2 NM_021643 NP_067675 NR_027303 upstream upstream 87605 NA NA NA 3 NA
25860 22486 0.37 FALSE
292 chr4 1164787 1164978 192
34.79042 6679.761 493759 493950 1 5842 13761.690 5.725781e+01 2.632552e+02 3.143229e+00 6.836307e+04 1.217188e+02 2.200918e+00 -4.187153e+00 1.022153e+01 1.088007e+00 0.0956068 FALSE 0.5228326 FALSE SPON2 NM_001128325 NM_001199021 NM_012445 NP_001121797 NP_001185950 NP_036577 inside exon inside 296 inside exon 0 2 2 inside transcription region
4551 887 0.37 FALSE
293 chr3 54667586 54667767 182
36.64632 6669.631 7020827 7021008 12 7966 4577.307 1.358307e+04 8.087912e+00 9.294698e+03 0.000000e+00 6.758242e-01 -1.071376e+01 -5.473302e-01 -1.000000e+100 -1.429480e+01 0.0957625 FALSE 0.5228326 FALSE ESRG NR_027122 NA NA 0 NA NA NA 4 NA
0 0 0.37 FALSE
294 chr1 62675976 62676222 247
26.92540 6650.573 11179373 11179619 12 5031 7612.496 1.775001e+04 1.760395e+03 1.776672e+04 0.000000e+00 7.853543e+02 -3.333849e+00 1.357700e-03 -1.000000e+100 -4.498333e+00 0.0963072 FALSE 0.5228326 FALSE L1TD1 NM_001164835 NM_019079 NP_001158307 NP_061952 inside exon inside 15502 inside exon 0 5 5 inside transcription region
17527 4743 0.37 FALSE
295 chrX 86942383 86942564 182
36.41493 6627.517 6796657 6796838 11 4336 4883.717 1.382548e+04 5.250000e+00 1.058761e+04 2.445055e-01 0.000000e+00 -1.136272e+01 -3.849534e-01 -1.578710e+01 -1.000000e+100 0.0966185 FALSE 0.5228326 FALSE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 169668 NA NA NA 11 NA
152335 148637 0.37 FALSE
296 chr6 120784782 120784990 209
31.58100 6600.430 12973437 12973645 25 2194 3222.344 1.073701e+04 1.543062e+01 5.358230e+03 7.559809e-01 2.942584e-01 -9.442581e+00 -1.002764e+00 -1.379388e+01 -1.515515e+01 0.0973190 FALSE 0.5228326 FALSE TBC1D32 NM_152730 NP_689943 NR_104452 XM_005266861 XP_005266918 downstream downstream 870654 NA NA NA 32 NA
255017 253659 0.37 FALSE
297 chr5 135903844 135904023 180
36.48373 6567.071 13263116 13263295 32 3903 5154.858 1.480095e+04 9.472222e+00 1.096281e+04 0.000000e+00 1.050000e+00 -1.060970e+01 -4.330719e-01 -1.000000e+100 -1.378301e+01 0.0976303 FALSE 0.5228326 FALSE TRPC7 NM_001167576 NM_001167577 NM_020389 NP_001161048 NP_001161049 NP_065122 XM_005272036 XP_005272093 upstream upstream 202680 NA NA NA 12 NA
152165 151819 0.37 FALSE
298 chr9 90028970 90029151 182
36.00097 6552.177 8214687 8214868 12 5446 4678.400 1.332907e+04 9.587912e-01 1.006170e+04 0.000000e+00 2.774725e-01 -1.376300e+01 -4.057026e-01 -1.000000e+100 -1.555187e+01 0.0977859 FALSE 0.5228326 FALSE DAPK1 NM_001288729 NM_001288730 NM_001288731 NM_004938 NP_001275658 NP_001275659 NP_001275660 NP_004929 XM_005251757 XM_006716988 XP_005251814 XP_006717051 upstream upstream 83507 NA NA NA 26 NA
210891 208286 0.37 FALSE
299 chr13 35375391 35375587 197
33.23331 6546.962 1762782 1762978 1 834 4793.976 1.344866e+04 4.863959e+01 1.046036e+04 2.068528e+00 1.014213e+01 -8.111116e+00 -3.625301e-01 -1.266657e+01 -1.037289e+01 0.0977859 FALSE 0.5228326 FALSE NBEA NM_001204197 NM_015678 NP_001191126 NP_056493 XM_005266346 XM_005266347 XM_005266348 XM_005266350 XM_005266351 XM_005266352 XM_006719803 XM_006719804 XM_006719805 XM_006719806 XP_005266403 XP_005266404 XP_005266405 XP_005266407 XP_005266408 XP_005266409 XP_006719866 XP_006719867 XP_006719868 XP_006719869 upstream upstream 140837 NA NA NA 57 NA
730450 728170 0.37 FALSE
300 chr2 67558971 67559171 201
32.53826 6540.191 7283783 7283983 17 8129 3667.400 1.638919e+04 0.000000e+00 1.946990e+03 8.208955e-01 0.000000e+00 -1.000000e+100 -3.073427e+00 -1.428519e+01 -1.000000e+100 0.0977859 FALSE 0.5228326 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 65271 NA NA NA 6 NA
13091 12589 0.37 FALSE
301 chr4 23725566 23725752 187
34.93023 6531.953 3032040 3032226 7 3112 4395.455 1.589335e+04 1.237701e+01 6.071273e+03 0.000000e+00 2.700535e-01 -1.032655e+01 -1.388353e+00 -1.000000e+100 -1.584482e+01 0.0980972 FALSE 0.5228326 FALSE PPARGC1A NM_013261 NP_037393 XM_005248130 XM_005248131 XM_005248132 XM_005248134 XP_005248187 XP_005248188 XP_005248189 XP_005248191 downstream downstream 165948 NA NA NA 13 NA
98056 94135 0.37 FALSE
302 chrX 30124024 30124194 171
38.06561 6509.220 2324352 2324522 7 174 7112.271 1.526326e+04 8.334795e+01 2.020499e+04 6.725146e+00 3.026316e+00 -7.516701e+00 4.046485e-01 -1.114821e+01 -1.230021e+01 0.0987198 FALSE 0.5228326 FALSE MAGEB2 NM_002364 NP_002355 upstream upstream 109481 NA NA NA 2 NA
4531 959 0.37 FALSE
303 chr8 115309377 115309617 241
26.96773 6499.223 10979384 10979624 27 1886 1981.315 8.123421e+03 0.000000e+00 1.783156e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -2.187655e+00 -1.000000e+100 -1.000000e+100 0.0990311 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 860135 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
304 chr20 12323450 12323640 191
34.01624 6497.102 1421055 1421245 2 4153 4343.303 1.525296e+04 6.057592e+00 6.450401e+03 0.000000e+00 7.096859e+00 -1.129806e+01 -1.241629e+00 -1.000000e+100 -1.106962e+01 0.0991089 FALSE 0.5228326 FALSE BTBD3 NM_001282550 NM_001282551 NM_001282552 NM_001282554 NM_014962 NM_181443 NP_001269479 NP_001269480 NP_001269481 NP_001269483 NP_055777 NP_852108 XM_006723550 XM_006723551 XP_006723613 XP_006723614 downstream downstream 451973 NA NA NA 5 NA
35766 5207 0.37 FALSE
305 chr20 13340238 13340434 197
32.92898 6487.010 1484102 1484298 4 4259 3927.469 1.090041e+04 1.329949e+01 8.714942e+03 6.672589e+00 2.025381e+00 -9.678795e+00 -3.228190e-01 -1.067385e+01 -1.239390e+01 0.0994202 FALSE 0.5228326 FALSE TASP1 NM_017714 NP_060184 XM_006723589 XM_006723590 XP_006723652 XP_006723653 XR_430268 NA NA 0 NA NA NA 10 NA
0 0 0.37 FALSE
306 chr12 10487419 10487607 189
34.23367 6470.163 2150760 2150948 7 3160 3904.516 1.433657e+04 3.703704e+00 5.181087e+03 5.317460e-01 6.851852e-01 -1.191844e+01 -1.468373e+00 -1.471860e+01 -1.435285e+01 0.1000428 FALSE 0.5228326 FALSE KLRD1 NM_001114396 NM_002262 NM_007334 NP_001107868 NP_002253 NP_031360 XM_005253363 XM_006719065 XM_006719066 XM_006719067 XM_006719068 XP_005253420 XP_006719128 XP_006719129 XP_006719130 XP_006719131 downstream downstream 30369 NA NA NA 7 NA
12800 6715 0.37 FALSE
307 chr9 124558815 124558992 178
36.33056 6466.840 12600430 12600607 22 3252 5028.384 1.815258e+04 2.669663e+01 6.962643e+03 0.000000e+00 0.000000e+00 -9.409301e+00 -1.382468e+00 -1.000000e+100 -1.000000e+100 0.1001985 FALSE 0.5228326 FALSE DAB2IP NM_032552 NM_138709 NP_115941 NP_619723 XM_005251719 XM_005251720 XM_005251721 XM_005251722 XM_005251723 XM_005251724 XM_005251725 XM_006716961 XM_006716962 XP_005251776 XP_005251777 XP_005251778 XP_005251779 XP_005251780 XP_005251781 XP_005251782 XP_006717024 XP_006717025 downstream downstream 229416 NA NA NA 17 NA
218410 216356 0.37 FALSE
308 chr2 207675919 207676094 176
36.72709 6463.968 22283174 22283349 48 4653 5197.723 1.568638e+04 8.420454e+00 1.029019e+04 0.000000e+00 3.619318e+00 -1.086333e+01 -6.082427e-01 -1.000000e+100 -1.208151e+01 0.1001985 FALSE 0.5228326 FALSE FASTKD2 NM_001136193 NM_001136194 NM_014929 NP_001129665 NP_001129666 NP_055744 downstream downstream 45807 NA NA NA 12 NA
30799 25108 0.37 FALSE
309 chr6 14299624 14299770 147
43.85337 6446.445 1531078 1531224 3 3927 9731.033 3.628614e+04 3.364286e+01 1.233538e+04 0.000000e+00 0.000000e+00 -1.007490e+01 -1.556616e+00 -1.000000e+100 -1.000000e+100 0.1007432 FALSE 0.5228326 FALSE CD83 NM_001040280 NM_001251901 NM_004233 NP_001035370 NP_001238830 NP_004224 downstream downstream 182137 NA NA NA 5 NA
19661 3692 0.37 FALSE
310 chr2 209945995 209946170 176
36.61539 6444.309 22600522 22600697 49 2661 4922.054 1.858332e+04 1.007955e+01 6.015412e+03 0.000000e+00 1.457386e+00 -1.084836e+01 -1.627273e+00 -1.000000e+100 -1.363834e+01 0.1007432 FALSE 0.5228326 FALSE PTH2R NM_005048 NP_005039 NR_073601 NA NA 0 NA NA NA 7 NA
0 0 0.37 FALSE
311 chr4 146758145 146758375 231
27.86168 6436.048 13415794 13416024 40 4092 2161.041 6.933162e+03 5.207792e+00 3.865229e+03 1.904762e-01 1.413420e+00 -1.037863e+01 -8.429595e-01 -1.515162e+01 -1.226011e+01 0.1008989 FALSE 0.5228326 FALSE ZNF827 NM_178835 NP_849157 XM_006714094 XM_006714095 XM_006714096 XP_006714157 XP_006714158 XP_006714159 inside intron inside 101232 inside intron -8733 6 14 inside transcription region
177719 175300 0.37 FALSE
312 chr4 23725889 23726111 223
28.85168 6433.925 3032363 3032585 7 3112 2668.636 1.112001e+04 6.289238e+00 2.210464e+03 5.369955e+00 1.044843e+00 -1.078799e+01 -2.330737e+00 -1.101596e+01 -1.337758e+01 0.1008989 FALSE 0.5228326 FALSE PPARGC1A NM_013261 NP_037393 XM_005248130 XM_005248131 XM_005248132 XM_005248134 XP_005248187 XP_005248188 XP_005248189 XP_005248191 downstream downstream 165589 NA NA NA 13 NA
98056 94135 0.37 FALSE
313 chr14 101198379 101198520 142
45.24460 6424.733 9360881 9361022 17 8209 24220.700 1.291549e+01 4.662676e+01 7.954225e+00 1.386644e+03 1.196494e+05 1.852056e+00 -6.993094e-01 6.746351e+00 1.317742e+01 0.1012880 FALSE 0.5228326 FALSE DLK1 NM_001032997 NM_003836 NP_003827 inside exon inside 5177 inside exon 0 4 5 inside transcription region
8265 7827 0.37 FALSE
314 chr8 116227830 116228043 214
29.98884 6417.612 11016869 11017082 28 5526 2804.063 1.066969e+04 8.757009e+00 3.335867e+03 5.317757e+00 6.799065e-01 -1.025079e+01 -1.677385e+00 -1.097041e+01 -1.393782e+01 0.1015215 FALSE 0.5228326 FALSE TRPS1 NM_001282902 NM_001282903 NM_014112 NP_001269831 NP_001269832 NP_054831 XM_005251049 XM_006716624 XM_006716625 XP_005251106 XP_006716687 XP_006716688 downstream downstream 452191 NA NA NA 6 NA
259510 253859 0.37 FALSE
315 chr13 54706763 54706973 211
30.41512 6417.590 4340925 4341135 9 1927 3239.926 9.847611e+03 1.482062e+02 6.202140e+03 0.000000e+00 1.670616e+00 -6.054096e+00 -6.670078e-01 -1.000000e+100 -1.252518e+01 0.1015215 FALSE 0.5228326 FALSE MIR1297 NR_031628 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
316 chr6 95266663 95266893 231
27.70032 6398.775 10594346 10594576 19 4107 2638.404 8.238677e+03 7.861472e+00 4.928868e+03 6.121212e+00 1.049351e+01 -1.003340e+01 -7.411564e-01 -1.039438e+01 -9.616772e+00 0.1015993 FALSE 0.5228326 FALSE MANEA NM_024641 NP_078917 XM_005267147 XP_005267204 upstream upstream 758480 NA NA NA 2 NA
9881 596 0.37 FALSE
317 chr8 72588362 72588567 206
30.89879 6365.151 7344408 7344613 11 5162 3056.603 1.004167e+04 1.453884e+00 5.236345e+03 0.000000e+00 3.546117e+00 -1.275380e+01 -9.393672e-01 -1.000000e+100 -1.146747e+01 0.1026110 FALSE 0.5228326 FALSE MSC NM_005098 NP_005089 downstream downstream 168164 NA NA NA 2 NA
2954 1517 0.37 FALSE
318 chr6 21364548 21364745 198
32.09277 6354.369 2104283 2104480 8 4726 3597.970 9.545217e+03 2.129040e+01 8.420452e+03 4.595960e-01 2.429293e+00 -8.808431e+00 -1.808803e-01 -1.434212e+01 -1.194003e+01 0.1031558 FALSE 0.5228326 FALSE CDKAL1 NM_017774 NP_060244 XM_006715127 XM_006715128 XP_006715190 XP_006715191 downstream downstream 829860 NA NA NA 16 NA
697946 684688 0.37 FALSE
319 chr6 31133348 31133478 131
48.17797 6311.314 3900751 3900881 9 1641 14529.150 2.892922e+04 4.672901e+01 4.365926e+04 1.335878e-01 1.040840e+01 -9.273993e+00 5.937604e-01 -1.772438e+01 -1.144056e+01 0.1043231 FALSE 0.5228326 FALSE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 4973 inside exon 0 3 5 inside transcription region
6337 6019 0.37 FALSE
320 chr12 11617077 11617246 170
37.11849 6310.144 2388918 2389087 8 2899 5553.922 1.433513e+04 4.706176e+01 1.338721e+04 0.000000e+00 2.058824e-01 -8.250784e+00 -9.870000e-02 -1.000000e+100 -1.608738e+01 0.1044009 FALSE 0.5228326 FALSE PRB2 NM_006248 NP_006239 upstream upstream 68579 NA NA NA 4 NA
4024 2702 0.37 FALSE
321 chr5 147251294 147251427 134
46.98446 6295.918 15122702 15122835 34 4040 11500.094 2.812660e+04 3.122761e+01 2.934264e+04 0.000000e+00 0.000000e+00 -9.814897e+00 6.106360e-02 -1.000000e+100 -1.000000e+100 0.1047122 FALSE 0.5228326 FALSE SCGB3A2 NM_054023 NP_473364 upstream upstream 6847 NA NA NA 3 NA
3482 3246 0.37 FALSE
322 chr9 118604015 118604202 188
33.39141 6277.585 12092311 12092498 19 2207 4333.357 1.382071e+04 1.437234e+01 7.818476e+03 7.420213e-01 1.248670e+01 -9.909321e+00 -8.218724e-01 -1.418501e+01 -1.011222e+01 0.1051014 FALSE 0.5228326 FALSE LINC00474 NM_021208 NR_024032 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
323 chr10 55929728 55929887 160
39.18622 6269.795 5621258 5621417 11 4015 6055.391 2.257400e+04 1.363750e+01 7.687431e+03 3.156250e-01 1.565625e+00 -1.069287e+01 -1.554089e+00 -1.612609e+01 -1.381564e+01 0.1052570 FALSE 0.5228326 FALSE PCDH15 NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_033056 NP_001136235 NP_001136236 NP_001136237 NP_001136238 NP_001136239 NP_001136240 NP_001136241 NP_001136242 NP_001136243 NP_001136244 NP_001136245 NP_149045 XM_006717950 XP_006718013 inside intron inside 631164 inside intron -13317 13 21 inside transcription region
806711 668631 0.37 FALSE
324 chr9 93178695 93178902 208
30.12040 6265.043 8540823 8541030 13 5274 2851.010 9.003781e+03 1.914423e+01 5.231637e+03 2.572115e-01 2.283654e-01 -8.877477e+00 -7.832686e-01 -1.509529e+01 -1.526690e+01 0.1054905 FALSE 0.5228326 FALSE RP11-555F9.2 NM_001105317 NR_034157 downstream downstream 166126 NA NA NA 6 NA
120314 42211 0.37 FALSE
325 chr15 36578519 36578693 175
35.73006 6252.760 2098735 2098909 3 2832 5290.906 2.112681e+04 2.692571e+01 5.299131e+03 2.457143e-01 1.417143e+00 -9.615875e+00 -1.995247e+00 -1.639173e+01 -1.386380e+01 0.1058796 FALSE 0.5228326 FALSE C15orf41 NM_001130010 NM_001290232 NM_001290233 NM_032499 NP_001123482 NP_001277161 NP_001277162 NP_115888 XM_005254719 XP_005254776 upstream upstream 293119 NA NA NA 12 NA
230637 228592 0.37 FALSE
326 chr8 120122875 120123118 244
25.59670 6245.594 11215637 11215880 32 10012 1722.219 1.487705e+00 0.000000e+00 0.000000e+00 8.608734e+03 8.750000e-01 -1.000000e+100 -1.000000e+100 1.249850e+01 -7.657335e-01 0.1059574 FALSE 0.5228326 FALSE COLEC10 NM_006438 NP_006429 XM_005250756 XP_005250813 downstream downstream 43451 NA NA NA 6 NA
39778 38909 0.37 FALSE
327 chr11 94082932 94083082 151
41.35329 6244.347 12536022 12536172 17 802 8865.132 1.656426e+04 1.146159e+02 2.764631e+04 0.000000e+00 4.768212e-01 -7.175123e+00 7.390132e-01 -1.000000e+100 -1.508427e+01 0.1060353 FALSE 0.5228326 FALSE GPR83 NM_016540 NP_057624 downstream downstream 51503 NA NA NA 4 NA
24108 21098 0.37 FALSE
328 chrX 124525809 124526019 211
29.58285 6241.981 10073960 10074170 30 5372 2463.249 6.811701e+03 2.154028e+00 5.502391e+03 0.000000e+00 0.000000e+00 -1.162676e+01 -3.079565e-01 -1.000000e+100 -1.000000e+100 0.1061131 FALSE 0.5228326 FALSE LOC100129520 NM_001195272 NP_001182201 XM_005262352 XP_005262409 downstream downstream 71840 NA NA NA 1 NA
2981 2981 0.37 FALSE
329 chr1 62672824 62673070 247
25.24224 6234.834 11176221 11176467 12 5031 6088.421 1.367060e+04 1.505737e+03 1.458763e+04 0.000000e+00 6.781316e+02 -3.182535e+00 9.366880e-02 -1.000000e+100 -4.333368e+00 0.1065022 FALSE 0.5228326 FALSE L1TD1 NM_001164835 NM_019079 NP_001158307 NP_061952 inside exon inside 12350 inside exon 0 4 5 inside transcription region
17527 4743 0.37 FALSE
330 chr1 223197776 223197904 129
48.25908 6225.422 28746966 28747094 40 5414 15445.724 2.681548e+04 1.862016e+02 5.022694e+04 0.000000e+00 0.000000e+00 -7.170057e+00 9.053955e-01 -1.000000e+100 -1.000000e+100 0.1067357 FALSE 0.5228326 FALSE DISP1 NM_032890 NP_116279 XM_005273335 XM_005273336 XM_006711592 XM_006711593 XM_006711594 XM_006711595 XP_005273392 XP_005273393 XP_006711655 XP_006711656 XP_006711657 XP_006711658 downstream downstream 209345 NA NA NA 10 NA
190906 63148 0.37 FALSE
331 chr20 38723658 38723849 192
32.40059 6220.913 4359094 4359285 9 961 3297.679 1.194394e+04 1.455729e+00 4.542997e+03 0.000000e+00 0.000000e+00 -1.300225e+01 -1.394563e+00 -1.000000e+100 -1.000000e+100 0.1068135 FALSE 0.5228326 FALSE MAFB NM_005461 NP_005452 downstream downstream 594027 NA NA NA 1 NA
3359 971 0.37 FALSE
332 chr4 167640397 167640549 153
40.62840 6216.146 14815064 14815216 45 5581 7293.722 2.043572e+04 1.857190e+01 1.601366e+04 0.000000e+00 6.601307e-01 -1.010376e+01 -3.517899e-01 -1.000000e+100 -1.491798e+01 0.1068913 FALSE 0.5228326 FALSE SPOCK3 NM_001040159 NM_001204352 NM_001204353 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001204359 NM_001251967 NM_016950 NP_001035249 NP_001191281 NP_001191282 NP_001191283 NP_001191284 NP_001191285 NP_001191287 NP_001238896 NP_058646 XM_005263041 XP_005263098 downstream downstream 514775 NA NA NA 11 NA
500788 499252 0.37 FALSE
333 chr4 93364275 93364429 155
40.05774 6208.949 8759977 8760131 26 3792 7166.806 1.762556e+04 4.935484e+01 1.815878e+04 0.000000e+00 3.354839e-01 -8.480262e+00 4.299860e-02 -1.000000e+100 -1.568107e+01 0.1070470 FALSE 0.5228326 FALSE GRID2 NM_001286838 NM_001510 NP_001273767 NP_001501 XM_006714195 XP_006714258 inside intron inside 138725 inside intron -138380 1 15 inside transcription region
1468099 1467841 0.37 FALSE
334 chr8 116830121 116830346 226
27.46938 6208.080 11040216 11040441 29 226 2155.253 7.598217e+03 7.451327e+00 3.168414e+03 0.000000e+00 2.181416e+00 -9.993948e+00 -1.261900e+00 -1.000000e+100 -1.176618e+01 0.1070470 FALSE 0.5228326 FALSE LINC00536 NR_046215 NA NA 0 NA NA NA 14 NA
0 0 0.37 FALSE
335 chr8 115294298 115294495 198
31.29644 6196.695 10964305 10964502 26 5529 2895.591 1.070261e+04 5.303030e-01 3.774813e+03 0.000000e+00 0.000000e+00 -1.430079e+01 -1.503486e+00 -1.000000e+100 -1.000000e+100 0.1074361 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 845056 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
336 chr12 86276001 86276186 186
33.27310 6188.797 10643993 10644178 25 340 7344.994 8.565790e+03 7.746237e+01 2.805776e+04 3.844086e-01 2.356989e+01 -6.788947e+00 1.711742e+00 -1.444366e+01 -8.505497e+00 0.1079030 FALSE 0.5228326 FALSE NTS NM_006183 NP_006174 inside exon inside 7928 inside exon 0 4 4 overlaps 3'UTR
8697 7971 0.37 FALSE
337 chr18 70993301 70993455 155
39.74967 6161.199 5723739 5723893 6 3341 7077.031 1.745793e+04 4.836129e+01 1.787757e+04 0.000000e+00 1.293548e+00 -8.495814e+00 3.426880e-02 -1.000000e+100 -1.372026e+01 0.1086034 FALSE 0.5228326 FALSE LOC100505817 NR_038340 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
338 chr16 68855904 68856128 225
27.37924 6160.330 8970410 8970634 17 4342 2480.101 5.201678e+03 4.483111e+03 2.713589e+03 0.000000e+00 2.128889e+00 -2.144768e-01 -9.387749e-01 -1.000000e+100 -1.125466e+01 0.1086034 FALSE 0.5228326 FALSE CDH1 NM_004360 NP_004351 NA NA 0 NA NA NA 15 NA
0 0 0.37 FALSE
339 chr12 10488210 10488429 220
27.99973 6159.941 2151551 2151770 7 3160 2157.143 6.830311e+03 1.191591e+01 3.943277e+03 0.000000e+00 2.113636e-01 -9.162918e+00 -7.925562e-01 -1.000000e+100 -1.497994e+01 0.1086813 FALSE 0.5228326 FALSE KLRD1 NM_001114396 NM_002262 NM_007334 NP_001107868 NP_002253 NP_031360 XM_005253363 XM_006719065 XM_006719066 XM_006719067 XM_006719068 XP_005253420 XP_006719128 XP_006719129 XP_006719130 XP_006719131 downstream downstream 31160 NA NA NA 7 NA
12800 6715 0.37 FALSE
340 chr20 12325202 12325404 203
30.30873 6152.673 1422678 1422880 2 4153 2824.401 1.028564e+04 8.325123e-01 3.831702e+03 1.320197e+00 2.512315e+00 -1.359280e+01 -1.424574e+00 -1.292759e+01 -1.199933e+01 0.1089147 FALSE 0.5228326 FALSE BTBD3 NM_001282550 NM_001282551 NM_001282552 NM_001282554 NM_014962 NM_181443 NP_001269479 NP_001269480 NP_001269481 NP_001269483 NP_055777 NP_852108 XM_006723550 XM_006723551 XP_006723613 XP_006723614 downstream downstream 453725 NA NA NA 5 NA
35766 5207 0.37 FALSE
341 chr1 5178186 5178353 168
36.57967 6145.385 1270086 1270253 4 2608 5253.800 1.803190e+04 2.303869e+01 8.213179e+03 2.767857e-01 6.011905e-01 -9.612277e+00 -1.134539e+00 -1.599142e+01 -1.487237e+01 0.1090704 FALSE 0.5228326 FALSE AJAP1 NM_001042478 NM_018836 NP_001035943 NP_061324 downstream downstream 463081 NA NA NA 6 NA
128746 119073 0.37 FALSE
342 chr13 43446726 43446921 196
31.27110 6129.136 2784915 2785110 5 6717 2870.069 9.082577e+03 1.852041e+00 5.265041e+03 0.000000e+00 8.775510e-01 -1.225977e+01 -7.866569e-01 -1.000000e+100 -1.333733e+01 0.1094595 FALSE 0.5228326 FALSE EPSTI1 NM_001002264 NM_033255 NP_001002264 NP_150280 XM_005266596 XM_005266597 XM_006719896 XP_005266653 XP_005266654 XP_006719959 downstream downstream 119486 NA NA NA 13 NA
105883 103915 0.37 FALSE
343 chr6 154244992 154245172 181
33.79692 6117.243 15904096 15904276 46 2464 4876.046 1.109669e+04 3.976519e+01 1.323442e+04 1.080110e+00 8.276243e+00 -8.124408e+00 2.541655e-01 -1.332666e+01 -1.038887e+01 0.1097708 FALSE 0.5228326 FALSE OPRM1 NM_000914 NM_001008503 NM_001008504 NM_001008505 NM_001145279 NM_001145280 NM_001145281 NM_001145282 NM_001145283 NM_001145284 NM_001145285 NM_001145286 NM_001145287 NM_001285522 NM_001285523 NM_001285524 NM_001285526 NM_001285527 NM_001285528 NP_000905 NP_001008503 NP_001008504 NP_001008505 NP_001138751 NP_001138752 NP_001138753 NP_001138754 NP_001138755 NP_001138756 NP_001138757 NP_001138758 NP_001138759 NP_001272451 NP_001272452 NP_001272453 NP_001272455 NP_001272456 NP_001272457 NR_104348 NR_104349 NR_104350 NR_104351 XM_006715496 XM_006715497 XP_006715559 XP_006715560 upstream upstream 86459 NA NA NA 3 NA
79682 79168 0.37 FALSE
344 chr9 90029157 90029333 177
34.47929 6102.834 8214874 8215050 12 5446 4191.951 1.553952e+04 1.000565e+01 5.409088e+03 2.853107e-01 8.559322e-01 -1.060091e+01 -1.522485e+00 -1.573305e+01 -1.414809e+01 0.1100821 FALSE 0.5228326 FALSE DAPK1 NM_001288729 NM_001288730 NM_001288731 NM_004938 NP_001275658 NP_001275659 NP_001275660 NP_004929 XM_005251757 XM_006716988 XP_005251814 XP_006717051 upstream upstream 83325 NA NA NA 26 NA
210891 208286 0.37 FALSE
345 chrX 113837297 113837467 171
35.67135 6099.801 9204395 9204565 25 4367 4455.802 1.733770e+04 0.000000e+00 4.941316e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -1.810945e+00 -1.000000e+100 -1.000000e+100 0.1102378 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 18746 inside intron 10806 2 7 5' UTR
326073 180632 0.37 FALSE
346 chr7 29825916 29826069 154
39.54689 6090.221 3480296 3480449 8 609 7050.423 1.726532e+04 4.788961e+01 1.793727e+04 0.000000e+00 1.626623e+00 -8.493949e+00 5.508310e-02 -1.000000e+100 -1.337371e+01 0.1103934 FALSE 0.5228326 FALSE WIPF3 NM_001080529 NP_001073998 XM_005249822 XP_005249879 upstream upstream 20101 NA NA NA 9 NA
110512 79791 0.37 FALSE
347 chr8 116228300 116228485 186
32.64586 6072.131 11017339 11017524 28 5526 3615.847 1.114512e+04 2.459677e+01 6.908000e+03 4.301075e-01 1.086021e+00 -8.823728e+00 -6.900726e-01 -1.466136e+01 -1.332507e+01 0.1109382 FALSE 0.5228326 FALSE TRPS1 NM_001282902 NM_001282903 NM_014112 NP_001269831 NP_001269832 NP_054831 XM_005251049 XM_006716624 XM_006716625 XP_005251106 XP_006716687 XP_006716688 downstream downstream 451749 NA NA NA 6 NA
259510 253859 0.37 FALSE
348 chr16 65311430 65311630 201
30.17319 6064.812 8147361 8147561 12 2881 2906.350 1.006914e+04 9.355721e+00 4.450236e+03 0.000000e+00 3.014925e+00 -1.007180e+01 -1.177987e+00 -1.000000e+100 -1.170553e+01 0.1112495 FALSE 0.5228326 FALSE LINC00922 NM_001101346 NR_027755 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
349 chr2 77315750 77315965 216
28.06435 6061.900 8903303 8903518 21 5816 2254.183 9.100931e+03 5.909722e+00 2.163840e+03 0.000000e+00 2.337963e-01 -1.058871e+01 -2.072420e+00 -1.000000e+100 -1.524847e+01 0.1112495 FALSE 0.5228326 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 433537 inside intron 339708 4 4 inside transcription region
774652 772976 0.37 FALSE
350 chrX 4809733 4809917 185
32.73989 6056.880 715510 715694 3 5024 3858.363 1.143375e+04 2.324324e+01 7.831370e+03 4.918919e-01 2.964865e+00 -8.942271e+00 -5.459615e-01 -1.450460e+01 -1.191304e+01 0.1114829 FALSE 0.5228326 FALSE NLGN4X NM_001282145 NM_001282146 NM_020742 NM_181332 NP_001269074 NP_001269075 NP_065793 NP_851849 XM_005274564 XM_005274565 XM_005274566 XM_005274568 XM_006724504 XP_005274621 XP_005274622 XP_005274623 XP_005274625 XP_006724567 downstream downstream 1259895 NA NA NA 6 NA
261729 258649 0.37 FALSE
351 chr12 4130307 4130497 191
31.69609 6053.953 672283 672473 1 3325 3694.646 1.084864e+04 1.985079e+01 7.596987e+03 5.641361e+00 2.104712e+00 -9.094103e+00 -5.140155e-01 -1.090918e+01 -1.233160e+01 0.1116386 FALSE 0.5228326 FALSE PARP11 NM_001286521 NM_001286522 NM_020367 NP_001273450 NP_001273451 NP_065100 NR_104461 XM_005253710 XM_005253711 XM_005253714 XM_006718987 XP_005253767 XP_005253768 XP_005253771 XP_006719050 upstream upstream 147699 NA NA NA 8 NA
64581 61106 0.37 FALSE
352 chr3 3887161 3887397 237
25.26798 5988.511 169545 169781 2 376 6194.959 9.405711e+03 1.159832e+04 2.082920e+03 0.000000e+00 7.887848e+03 3.023068e-01 -2.174930e+00 -1.000000e+100 -2.539052e-01 0.1140511 FALSE 0.5228326 FALSE LRRN1 NM_020873 NP_065924 XM_005265351 XP_005265408 inside exon inside 46040 inside exon 0 2 2 inside transcription region
48266 2150 0.37 FALSE
353 chr13 56618327 56618504 178
33.61676 5983.783 4571380 4571557 14 3475 3799.281 1.521892e+04 1.325843e+00 3.775596e+03 0.000000e+00 5.589888e-01 -1.348667e+01 -2.011090e+00 -1.000000e+100 -1.473269e+01 0.1140511 FALSE 0.5228326 FALSE MIR5007 NR_049804 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
354 chr4 120919658 120919893 236
25.24083 5956.835 11516378 11516613 33 5835 1636.747 6.410218e+03 1.671610e+00 1.771845e+03 0.000000e+00 0.000000e+00 -1.190492e+01 -1.855121e+00 -1.000000e+100 -1.000000e+100 0.1149072 FALSE 0.5228326 FALSE MAD2L1 NM_002358 NP_002349 downstream downstream 68120 NA NA NA 5 NA
7434 6616 0.37 FALSE
355 chr5 120037272 120037491 220
27.05616 5952.356 11492478 11492697 19 4521 2021.181 8.267859e+03 1.002273e+00 1.836711e+03 2.295455e-01 1.022727e-01 -1.301002e+01 -2.170389e+00 -1.513645e+01 -1.630280e+01 0.1150628 FALSE 0.5228326 FALSE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 237253 NA NA NA 3 NA
222945 205505 0.37 FALSE
356 chr6 87795968 87796152 185
31.98785 5917.752 9873626 9873810 15 2707 27548.750 0.000000e+00 1.377422e+05 4.675676e-01 1.081081e+00 0.000000e+00 1.000000e+100 1.000000e+100 1.000000e+100 NaN 0.1161524 FALSE 0.5228326 FALSE CGA NM_000735 NM_001252383 NP_000726 NP_001239312 inside exon inside 8713 inside exon 0 4 5 inside transcription region
9649 2444 0.37 FALSE
357 chrX 86941117 86941305 189
31.30891 5917.384 6795391 6795579 11 4336 3101.047 1.099820e+04 7.304233e+00 4.499579e+03 0.000000e+00 1.560847e-01 -1.055625e+01 -1.289405e+00 -1.000000e+100 -1.610458e+01 0.1161524 FALSE 0.5228326 FALSE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 168402 NA NA NA 11 NA
152335 148637 0.37 FALSE
358 chr10 78581478 78581602 125
47.27973 5909.966 7905463 7905587 14 1989 10878.223 2.887283e+04 0.000000e+00 2.551828e+04 0.000000e+00 0.000000e+00 -1.000000e+100 -1.781813e-01 -1.000000e+100 -1.000000e+100 0.1162302 FALSE 0.5228326 FALSE KCNMA1 NM_001014797 NM_001161352 NM_001161353 NM_001271518 NM_001271519 NM_001271520 NM_001271521 NM_001271522 NM_002247 NP_001014797 NP_001154824 NP_001154825 NP_001258447 NP_001258448 NP_001258449 NP_001258450 NP_001258451 NP_002238 XM_005269776 XM_005269778 XM_005269779 XM_005269780 XM_005269781 XM_005269785 XM_005269787 XM_005269789 XM_005269792 XM_005269795 XM_005269796 XM_005269797 XM_005269800 XM_005269801 XM_005269803 XM_005269804 XM_006717821 XM_006717822 XM_006717823 XM_006717824 XM_006717825 XM_006717826 XM_006717827 XM_006717828 XM_006717829 XM_006717830 XP_005269833 XP_005269835 XP_005269836 XP_005269837 XP_005269838 XP_005269842 XP_005269844 XP_005269846 XP_005269849 XP_005269852 XP_005269853 XP_005269854 XP_005269857 XP_005269858 XP_005269860 XP_005269861 XP_006717884 XP_006717885 XP_006717886 XP_006717887 XP_006717888 XP_006717889 XP_006717890 XP_006717891 XP_006717892 XP_006717893 downstream downstream 815975 NA NA NA 29 NA
768218 759773 0.37 FALSE
359 chr1 229313085 229313237 153
38.60412 5906.430 29953118 29953270 45 5451 6771.861 1.842013e+04 2.840196e+01 1.540186e+04 6.973856e+00 1.934640e+00 -9.341077e+00 -2.581785e-01 -1.136704e+01 -1.321693e+01 0.1164637 FALSE 0.5228326 FALSE RAB4A NM_001271998 NM_004578 NP_001258927 NP_004569 NR_073545 upstream upstream 93572 NA NA NA 8 NA
34831 31637 0.37 FALSE
360 chr14 29237250 29237481 232
25.38540 5889.413 1313818 1314049 1 1760 2498.165 7.025862e+00 8.965517e-01 6.614224e+00 0.000000e+00 1.247629e+04 -2.970216e+00 -8.710330e-02 -1.000000e+100 1.079423e+01 0.1165415 FALSE 0.5228326 FALSE FOXG1 NM_005249 NP_005240 inside exon inside 972 inside exon 0 1 1 inside transcription region
3205 1469 0.37 FALSE
361 chrX 113837513 113837700 188
31.30240 5884.851 9204611 9204798 25 4367 3305.740 8.793920e+03 2.366223e+01 7.709165e+03 1.327128e+00 6.276596e-01 -8.537776e+00 -1.899319e-01 -1.269398e+01 -1.377424e+01 0.1165415 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 18962 inside intron 10573 2 7 5' UTR
326073 180632 0.37 FALSE
362 chr13 41734169 41734327 159
36.90338 5867.638 2522948 2523106 4 159 5280.443 1.463327e+04 4.698113e+00 1.176019e+04 1.144654e+00 2.902516e+00 -1.160488e+01 -3.153406e-01 -1.364205e+01 -1.229966e+01 0.1173197 FALSE 0.5228326 FALSE KBTBD6 NM_152903 NP_690867 upstream upstream 27233 NA NA NA 1 NA
5227 2024 0.37 FALSE
363 chr8 72589947 72590128 182
32.20559 5861.417 7345993 7346174 11 5162 3694.499 1.169978e+04 1.464011e+01 6.748758e+03 7.376374e+00 1.942308e+00 -9.642339e+00 -7.937875e-01 -1.063128e+01 -1.255642e+01 0.1173976 FALSE 0.5228326 FALSE MSC NM_005098 NP_005089 downstream downstream 166603 NA NA NA 2 NA
2954 1517 0.37 FALSE
364 chr6 102553025 102553194 170
34.35293 5839.999 11178724 11178893 21 170 4660.791 1.341037e+04 8.705882e-01 9.878121e+03 0.000000e+00 1.458824e+01 -1.391100e+01 -4.410409e-01 -1.000000e+100 -9.844328e+00 0.1183315 FALSE 0.5228326 FALSE GRIK2 NM_001166247 NM_021956 NM_175768 NP_001159719 NP_068775 NP_786944 XM_005266945 XM_005266946 XM_006715465 XP_005267002 XP_005267003 XP_006715528 downstream downstream 706164 NA NA NA 17 NA
671097 664730 0.37 FALSE
365 chr10 6672334 6672532 199
29.32956 5836.582 801663 801861 2 366 2645.096 9.621352e+03 5.243719e+00 3.593673e+03 1.248744e+00 3.962312e+00 -1.084143e+01 -1.420780e+00 -1.291155e+01 -1.124568e+01 0.1183315 FALSE 0.5228326 FALSE PRKCQ-AS1 NR_036502 NR_036503 NA NA 0 NA NA NA 2 NA
0 0 0.37 FALSE
366 chr10 98494765 98494935 171
34.11354 5833.415 10321545 10321715 19 2724 4393.737 1.166709e+04 2.680994e+01 1.026886e+04 3.608187e+00 2.312866e+00 -8.765461e+00 -1.841685e-01 -1.165888e+01 -1.230048e+01 0.1184093 FALSE 0.5228326 FALSE PIK3AP1 NM_152309 NP_689522 XM_005269498 XM_005269499 XP_005269555 XP_005269556 upstream upstream 14486 NA NA NA 17 NA
127210 124817 0.37 FALSE
367 chr5 153857547 153857760 214
27.23742 5828.809 16166371 16166584 37 3153 13225.324 0.000000e+00 6.608803e+04 3.417991e+01 4.413551e+00 0.000000e+00 1.000000e+100 1.000000e+100 1.000000e+100 NaN 0.1184871 FALSE 0.5228326 FALSE HAND1 NM_004821 NP_004812 XM_005268531 XP_005268588 inside exon inside 64 inside exon 0 1 2 overlaps 5' UTR
3292 2202 0.37 FALSE
368 chr9 82755572 82755733 162
35.91850 5818.798 7525850 7526011 7 4979 4942.780 1.831173e+04 6.030864e+00 6.392636e+03 5.462963e-01 2.956790e+00 -1.156812e+01 -1.518285e+00 -1.503272e+01 -1.259645e+01 0.1187984 FALSE 0.5228326 FALSE TLE4 NM_001282748 NM_001282749 NM_001282753 NM_001282760 NM_007005 NP_001269677 NP_001269678 NP_001269682 NP_001269689 NP_008936 NR_104239 XM_005252167 XM_005252169 XM_005252173 XM_005252174 XM_005252175 XM_005252177 XM_006717264 XM_006717265 XM_006717266 XM_006717267 XM_006717268 XM_006717269 XM_006717270 XP_005252224 XP_005252226 XP_005252230 XP_005252231 XP_005252232 XP_005252234 XP_006717327 XP_006717328 XP_006717329 XP_006717330 XP_006717331 XP_006717332 XP_006717333 downstream downstream 568694 NA NA NA 20 NA
154778 152353 0.37 FALSE
369 chr8 105300727 105300918 192
30.18578 5795.670 10572767 10572958 23 1208 3439.143 1.062798e+04 1.895052e+01 6.532484e+03 6.197917e+00 1.010417e+01 -9.131414e+00 -7.021636e-01 -1.074380e+01 -1.003870e+01 0.1196545 FALSE 0.5228326 FALSE RIMS2 NM_001100117 NM_001282881 NM_001282882 NM_014677 NP_001093587 NP_001269810 NP_001269811 NP_055492 XM_005251106 XM_005251107 XM_005251108 XM_006716690 XM_006716691 XM_006716692 XM_006716693 XM_006716694 XM_006716695 XM_006716696 XM_006716697 XM_006716698 XM_006716699 XP_005251163 XP_005251164 XP_005251165 XP_006716753 XP_006716754 XP_006716755 XP_006716756 XP_006716757 XP_006716758 XP_006716759 XP_006716760 XP_006716761 XP_006716762 downstream downstream 787751 NA NA NA 24 NA
753680 750933 0.37 FALSE
370 chr12 103619317 103619516 200
28.94893 5789.786 12176478 12176677 30 5060 2559.367 7.542958e+03 1.426750e+01 5.236470e+03 9.650000e-01 2.175000e+00 -9.046254e+00 -5.265357e-01 -1.293231e+01 -1.175990e+01 0.1201214 FALSE 0.5228326 FALSE C12orf42 NM_001099336 NM_001278419 NM_001278420 NM_198521 NP_001092806 NP_001265348 NP_001265349 NP_940923 NR_103526 XM_006719377 XM_006719378 XM_006719379 XM_006719380 XM_006719381 XP_006719440 XP_006719441 XP_006719442 XP_006719443 XP_006719444 NA NA 0 NA NA NA 11 NA
0 0 0.37 FALSE
371 chr16 13448183 13448369 187
30.95187 5787.999 2742507 2742693 5 5109 2924.163 1.020403e+04 6.197861e+00 4.409061e+03 2.700535e-01 1.248663e+00 -1.068508e+01 -1.210596e+00 -1.520554e+01 -1.299647e+01 0.1201214 FALSE 0.5228326 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 452706 NA NA NA 5 NA
338796 333344 0.37 FALSE
372 chr20 38897799 38897950 152
38.06765 5786.283 4365491 4365642 10 5561 5468.214 1.937513e+04 6.279605e+00 7.959655e+03 0.000000e+00 0.000000e+00 -1.159124e+01 -1.283429e+00 -1.000000e+100 -1.000000e+100 0.1202771 FALSE 0.5228326 FALSE MAFB NM_005461 NP_005452 downstream downstream 419926 NA NA NA 1 NA
3359 971 0.37 FALSE
373 chr1 5175933 5176108 176
32.73542 5761.433 1267930 1268105 4 2608 3883.953 9.661247e+03 2.821591e+01 9.727415e+03 6.789773e-01 2.210227e+00 -8.419557e+00 9.847000e-03 -1.379656e+01 -1.209380e+01 0.1206662 FALSE 0.5228326 FALSE AJAP1 NM_001042478 NM_018836 NP_001035943 NP_061324 downstream downstream 460828 NA NA NA 6 NA
128746 119073 0.37 FALSE
374 chr1 222141921 222142091 171
33.64348 5753.036 28565171 28565341 39 8614 4437.965 1.061941e+04 4.036257e+01 1.152447e+04 8.859649e-01 4.690059e+00 -8.039470e+00 1.179969e-01 -1.354909e+01 -1.114481e+01 0.1208996 FALSE 0.5228326 FALSE DUSP10 NM_007207 NM_144728 NM_144729 NP_009138 NP_653329 NP_653330 upstream upstream 226405 NA NA NA 4 NA
40752 37332 0.37 FALSE
375 chr2 67561108 67561300 193
29.78501 5748.507 7285920 7286112 17 8129 3114.635 1.349632e+04 6.772021e+00 2.063301e+03 2.435233e-01 6.536269e+00 -1.096069e+01 -2.709541e+00 -1.575815e+01 -1.101181e+01 0.1209775 FALSE 0.5228326 FALSE ETAA1 NM_019002 NP_061875 XM_005264374 XM_005264375 XM_005264376 XM_005264377 XM_005264378 XP_005264431 XP_005264432 XP_005264433 XP_005264434 XP_005264435 upstream upstream 63142 NA NA NA 6 NA
13091 12589 0.37 FALSE
376 chr6 132241498 132241700 203
28.18895 5722.356 13988901 13989103 42 1116 2152.160 7.555746e+03 0.000000e+00 3.205052e+03 0.000000e+00 0.000000e+00 -1.000000e+100 -1.237227e+00 -1.000000e+100 -1.000000e+100 0.1216779 FALSE 0.5228326 FALSE ENPP1 NM_006208 NP_006199 XM_005267017 XP_005267074 downstream downstream 112342 NA NA NA 25 NA
87139 82475 0.37 FALSE
377 chr15 35084291 35084482 192
29.77303 5716.422 1976446 1976637 1 5287 12643.445 2.973151e+02 5.862440e+04 3.919078e+03 1.893229e+00 3.745417e+02 7.623365e+00 3.720450e+00 -7.295000e+00 3.331335e-01 0.1216779 FALSE 0.5228326 FALSE ACTC1 NM_005159 NP_005150 inside exon inside 3445 inside exon 0 5 7 inside transcription region
7630 4396 0.37 FALSE
378 chr7 42914506 42914680 175
32.57655 5700.896 4866675 4866849 11 3821 3807.730 1.213130e+04 5.225714e+00 6.890551e+03 1.791429e+00 9.780000e+00 -1.118082e+01 -8.160428e-01 -1.272534e+01 -1.027661e+01 0.1220670 FALSE 0.5228326 FALSE C7orf25 NM_001099858 NM_024054 NP_001093328 NP_076959 XM_005249844 XP_005249901 downstream downstream 37471 NA NA NA 2 NA
3279 2432 0.37 FALSE
379 chr15 89092289 89092459 171
33.28940 5692.487 10166746 10166916 9 3260 4087.679 9.378023e+03 3.519006e+01 1.102375e+04 2.777778e-01 1.149123e+00 -8.057972e+00 2.332599e-01 -1.504307e+01 -1.299454e+01 0.1225340 FALSE 0.5228326 FALSE DET1 NM_001144074 NM_017996 NP_001137546 NP_060466 NR_026645 XM_006720597 XM_006720598 XM_006720599 XP_006720660 XP_006720661 XP_006720662 XR_429461 NA NA 0 NA NA NA 7 NA
0 0 0.37 FALSE
380 chr8 42038008 42038203 196
28.95237 5674.665 4923041 4923236 7 17976 6637.776 9.553827e+01 3.807398e+01 3.372194e+01 3.296916e+04 5.238520e+01 -1.327273e+00 -1.502391e+00 8.430823e+00 -8.669193e-01 0.1233122 FALSE 0.5228326 FALSE PLAT NM_000930 NM_000931 NM_033011 NP_000921 NP_127509 inside exon inside 26991 inside exon 0 7 11 inside transcription region
32958 17192 0.37 FALSE
381 chr8 80301311 80301482 172
32.98307 5673.087 7970928 7971099 16 1972 4961.672 1.170143e+04 6.232267e+01 1.303610e+04 2.936047e-01 8.209302e+00 -7.552712e+00 1.558276e-01 -1.528245e+01 -1.047714e+01 0.1234678 FALSE 0.5228326 FALSE STMN2 NM_001199214 NM_007029 NP_001186143 NP_008960 XM_005251142 XP_005251199 upstream upstream 221567 NA NA NA 5 NA
55361 53678 0.37 FALSE
382 chr6 121944129 121944304 176
32.16015 5660.187 13049587 13049762 26 2940 3545.702 1.113986e+04 9.477273e+00 6.573835e+03 2.869318e-01 5.048296e+00 -1.019897e+01 -7.609240e-01 -1.524466e+01 -1.110765e+01 0.1239348 FALSE 0.5228326 FALSE GJA1 NM_000165 NP_000156 downstream downstream 187384 NA NA NA 2 NA
14128 1148 0.37 FALSE
383 chr6 14299158 14299313 156
36.27233 5658.484 1530612 1530767 3 3927 5258.171 1.285366e+04 4.719872e+01 1.338945e+04 0.000000e+00 5.480769e-01 -8.089216e+00 5.891660e-02 -1.000000e+100 -1.451744e+01 0.1240126 FALSE 0.5228326 FALSE CD83 NM_001040280 NM_001251901 NM_004233 NP_001035370 NP_001238830 NP_004224 downstream downstream 181671 NA NA NA 5 NA
19661 3692 0.37 FALSE
384 chr1 229315383 229315563 181
31.26064 5658.175 29955416 29955596 45 5451 4326.381 1.169653e+04 6.288674e+01 9.849663e+03 3.906077e+00 1.891436e+01 -7.539109e+00 -2.479347e-01 -1.154807e+01 -9.272383e+00 0.1240904 FALSE 0.5228326 FALSE RAB4A NM_001271998 NM_004578 NP_001258927 NP_004569 NR_073545 upstream upstream 91246 NA NA NA 8 NA
34831 31637 0.37 FALSE
385 chr2 5143694 5143878 185
30.52218 5646.603 426617 426801 1 5646 3486.958 1.068073e+04 1.497027e+01 6.724297e+03 6.540540e+00 8.254054e+00 -9.478694e+00 -6.675548e-01 -1.067331e+01 -1.033762e+01 0.1247908 FALSE 0.5228326 FALSE AC022311.1 NR_034134 NA NA 0 NA NA NA 5 NA
0 0 0.37 FALSE
386 chr2 118036368 118036562 195
28.84851 5625.460 13417181 13417375 26 4821 2621.685 8.541479e+03 1.132564e+01 4.551323e+03 1.197436e+00 3.100000e+00 -9.558749e+00 -9.082000e-01 -1.280032e+01 -1.142800e+01 0.1259582 FALSE 0.5228326 FALSE DDX18 NM_006773 NP_006764 upstream upstream 535693 NA NA NA 14 NA
17698 15946 0.37 FALSE
387 chr4 1164190 1164364 175
32.03365 5605.889 493162 493336 1 5842 8502.821 3.876286e+01 1.476714e+02 1.445714e+00 4.225915e+04 6.707143e+01 1.929644e+00 -4.744821e+00 1.009037e+01 7.910234e-01 0.1268921 FALSE 0.5228326 FALSE SPON2 NM_001128325 NM_001199021 NM_012445 NP_001121797 NP_001185950 NP_036577 inside exon inside 910 inside exon 0 2 2 overlaps 3'UTR
4551 887 0.37 FALSE
388 chr8 114523522 114523688 167
33.56491 5605.340 10924227 10924393 24 2224 4283.649 9.815883e+03 6.167066e+01 1.153924e+04 2.544910e-01 1.194611e+00 -7.314390e+00 2.333582e-01 -1.523522e+01 -1.300436e+01 0.1268921 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 74280 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
389 chr6 114749215 114749356 142
39.30491 5581.297 12445900 12446041 23 5713 5728.489 1.519270e+04 6.549296e-01 1.344901e+04 0.000000e+00 7.746480e-02 -1.450168e+01 -1.758779e-01 -1.000000e+100 -1.758141e+01 0.1280595 FALSE 0.5228326 FALSE HS3ST5 NM_153612 NP_705840 XM_006715379 XP_006715442 upstream upstream 85675 NA NA NA 5 NA
286790 5588 0.37 FALSE
390 chr11 94389085 94389298 214
26.03156 5570.753 12612122 12612335 19 6962 1890.846 3.717811e+03 2.719626e+00 5.732231e+03 1.467290e+00 0.000000e+00 -1.041683e+01 6.246435e-01 -1.130708e+01 -1.000000e+100 0.1285264 FALSE 0.5228326 FALSE PIWIL4 NM_152431 NP_689644 NA NA 0 NA NA NA 19 NA
0 0 0.37 FALSE
391 chr9 118602191 118602351 161
34.58673 5568.464 12090487 12090647 19 2207 4490.166 1.538543e+04 9.531056e+00 7.048988e+03 2.944099e+00 3.944099e+00 -1.065664e+01 -1.126076e+00 -1.235145e+01 -1.192958e+01 0.1286820 FALSE 0.5228326 FALSE LINC00474 NM_021208 NR_024032 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
392 chr14 101195273 101195403 131
42.44895 5560.813 9357775 9357905 17 8209 16918.142 7.465649e+00 3.335496e+01 5.076336e+00 9.075992e+02 8.363721e+04 2.159562e+00 -5.564801e-01 6.925644e+00 1.345159e+01 0.1292268 FALSE 0.5228326 FALSE DLK1 NM_001032997 NM_003836 NP_003827 inside exon inside 2071 inside exon 0 3 5 inside transcription region
8265 7827 0.37 FALSE
393 chr9 82756102 82756264 163
34.04253 5548.932 7526370 7526532 7 4979 4672.354 9.387334e+03 4.107055e+01 1.393216e+04 0.000000e+00 1.208589e+00 -7.836467e+00 5.696311e-01 -1.000000e+100 -1.292318e+01 0.1301607 FALSE 0.5228326 FALSE TLE4 NM_001282748 NM_001282749 NM_001282753 NM_001282760 NM_007005 NP_001269677 NP_001269678 NP_001269682 NP_001269689 NP_008936 NR_104239 XM_005252167 XM_005252169 XM_005252173 XM_005252174 XM_005252175 XM_005252177 XM_006717264 XM_006717265 XM_006717266 XM_006717267 XM_006717268 XM_006717269 XM_006717270 XP_005252224 XP_005252226 XP_005252230 XP_005252231 XP_005252232 XP_005252234 XP_006717327 XP_006717328 XP_006717329 XP_006717330 XP_006717331 XP_006717332 XP_006717333 downstream downstream 569224 NA NA NA 20 NA
154778 152353 0.37 FALSE
394 chr19 43829717 43829874 158
35.06584 5540.403 10852344 10852501 5 1755 4553.887 1.725897e+04 1.575316e+01 5.494392e+03 0.000000e+00 3.196203e-01 -1.009749e+01 -1.651315e+00 -1.000000e+100 -1.572063e+01 0.1306277 FALSE 0.5228326 FALSE PRG1 NR_026881 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
395 chr8 133093004 133093144 141
39.27606 5537.925 12338812 12338952 37 5510 5843.170 1.809327e+04 2.365248e+00 1.112022e+04 0.000000e+00 0.000000e+00 -1.290117e+01 -7.022683e-01 -1.000000e+100 -1.000000e+100 0.1308611 FALSE 0.5228326 FALSE HHLA1 NM_001145095 NM_005712 NP_001138567 inside intron inside 24368 inside intron 791 10 16 inside transcription region
43779 41270 0.37 FALSE
396 chr11 23205922 23206063 142
38.95628 5531.792 3673972 3674113 7 2401 5865.489 2.266660e+04 4.457746e+00 6.656039e+03 3.556338e-01 0.000000e+00 -1.231197e+01 -1.767832e+00 -1.595982e+01 -1.000000e+100 0.1313281 FALSE 0.5228326 FALSE CCDC179 NM_001195637 NP_001182566 upstream upstream 323950 NA NA NA 4 NA
13504 12911 0.37 FALSE
397 chr1 222149351 222149506 156
35.41980 5525.489 28571844 28571999 39 8614 4959.188 1.126186e+04 5.209936e+01 1.348045e+04 3.237179e-01 1.201923e+00 -7.755964e+00 2.594235e-01 -1.508635e+01 -1.319381e+01 0.1317172 FALSE 0.5228326 FALSE DUSP10 NM_007207 NM_144728 NM_144729 NP_009138 NP_653329 NP_653330 upstream upstream 233835 NA NA NA 4 NA
40752 37332 0.37 FALSE
398 chr10 55927780 55927956 177
31.20864 5523.929 5619378 5619554 11 4015 3600.777 1.131420e+04 5.584746e+00 6.666545e+03 6.957627e+00 1.059887e+01 -1.098436e+01 -7.631231e-01 -1.066725e+01 -1.006001e+01 0.1317172 FALSE 0.5228326 FALSE PCDH15 NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_033056 NP_001136235 NP_001136236 NP_001136237 NP_001136238 NP_001136239 NP_001136240 NP_001136241 NP_001136242 NP_001136243 NP_001136244 NP_001136245 NP_149045 XM_006717950 XP_006718013 inside intron inside 633095 inside intron 14727 14 21 inside transcription region
806711 668631 0.37 FALSE
399 chr8 115258351 115258532 182
30.31580 5517.475 10960559 10960740 25 3330 2899.479 9.817486e+03 5.478022e+00 4.671978e+03 5.549451e-01 1.895604e+00 -1.080748e+01 -1.071320e+00 -1.411072e+01 -1.233848e+01 0.1321841 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 809109 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
400 chr16 9765342 9765536 195
28.28981 5516.512 2218809 2219003 4 8636 2806.145 1.362730e+04 0.000000e+00 4.034205e+02 0.000000e+00 0.000000e+00 -1.000000e+100 -5.078072e+00 -1.000000e+100 -1.000000e+100 0.1322620 FALSE 0.5228326 FALSE GRIN2A NM_000833 NM_001134407 NM_001134408 NP_000824 NP_001127879 NP_001127880 XM_005255267 XM_005255268 XP_005255324 XP_005255325 downstream downstream 510727 NA NA NA 13 NA
428998 417262 0.37 FALSE
401 chr2 189868708 189868869 162
34.02450 5511.969 20135000 20135161 41 27987 8314.170 1.256173e+00 5.983966e+03 0.000000e+00 3.558377e+04 1.858025e+00 1.221785e+01 -1.000000e+100 1.478990e+01 5.647347e-01 0.1324954 FALSE 0.5228326 FALSE COL3A1 NM_000090 NP_000081 inside exon inside 29609 inside exon 0 39 51 inside transcription region
38373 37284 0.37 FALSE
402 chr2 217538863 217539079 217
25.35771 5502.623 23439810 23440026 55 6953 5200.821 6.877189e+01 7.530316e+03 8.764977e+00 1.044418e+04 7.952067e+03 6.774748e+00 -2.971997e+00 7.246665e+00 6.853367e+00 0.1328067 FALSE 0.5228326 FALSE IGFBP5 NM_000599 NP_000590 inside exon inside 21193 inside exon 0 4 4 3'UTR
23444 18024 0.37 FALSE
403 chr4 187168256 187168448 193
28.36132 5473.734 16449223 16449415 52 1412 2206.409 5.561756e+03 5.233161e-01 5.469764e+03 0.000000e+00 0.000000e+00 -1.337557e+01 -2.406190e-02 -1.000000e+100 -1.000000e+100 0.1335071 FALSE 0.5228326 FALSE KLKB1 NM_000892 NP_000883 XM_005262987 XM_006714213 XP_005263044 XP_006714276 inside intron inside 19584 inside intron 2949 8 15 inside transcription region
30953 25911 0.37 FALSE
404 chr18 70994699 70994839 141
38.81802 5473.340 5725137 5725277 6 3341 6929.884 1.349547e+04 9.001418e+01 2.106358e+04 3.581560e-01 0.000000e+00 -7.228107e+00 6.422755e-01 -1.520153e+01 -1.000000e+100 0.1335850 FALSE 0.5228326 FALSE LOC100505817 NR_038340 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
405 chr19 47899819 47899970 152
35.93979 5462.848 12348424 12348575 7 152 5946.247 2.171366e+04 2.213816e+01 7.977839e+03 3.052632e+00 1.454276e+01 -9.937852e+00 -1.444533e+00 -1.279626e+01 -1.054409e+01 0.1339741 FALSE 0.5228326 FALSE MEIS3 NM_001009813 NM_020160 NP_001009813 NP_064545 XM_005259086 XP_005259143 downstream downstream 15674 NA NA NA 7 NA
9269 6127 0.37 FALSE
406 chr14 51362264 51362422 159
34.31920 5456.753 3253047 3253205 10 2517 5144.687 1.192978e+04 3.491195e+01 1.374862e+04 1.238994e+00 8.880503e+00 -8.416631e+00 2.047190e-01 -1.323311e+01 -1.039164e+01 0.1340519 FALSE 0.5228326 FALSE ABHD12B NM_001206673 NM_181533 NM_181814 NP_001193602 NP_861535 XM_005267356 XM_005267357 XM_006720052 XP_005267413 XP_005267414 XP_006720115 NA NA 0 NA NA NA 10 NA
0 0 0.37 FALSE
407 chr5 121811798 121811988 191
28.51449 5446.268 11608094 11608284 21 3455 2332.750 7.863254e+03 6.910995e+00 3.792277e+03 0.000000e+00 1.308901e+00 -1.015202e+01 -1.052062e+00 -1.000000e+100 -1.255256e+01 0.1342076 FALSE 0.5228326 FALSE MGC32805 NR_051996 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
408 chr6 94540571 94540739 169
32.16453 5435.806 10560048 10560216 18 3908 3454.909 1.114979e+04 2.668639e+00 6.117322e+03 1.177515e+00 3.585799e+00 -1.202862e+01 -8.660443e-01 -1.320898e+01 -1.160243e+01 0.1346745 FALSE 0.5228326 FALSE TSG1 NR_015362 NA NA 0 NA NA NA 10 NA
0 0 0.37 FALSE
409 chr4 79639307 79639481 175
31.04196 5432.343 7320838 7321012 15 3968 3405.079 1.075021e+04 5.157143e+00 6.256294e+03 3.942857e+00 9.791429e+00 -1.102551e+01 -7.809844e-01 -1.141284e+01 -1.010056e+01 0.1348301 FALSE 0.5228326 FALSE LINC01094 NR_038303 NR_038304 NR_038305 NR_038306 NR_038307 NR_038308 NA NA 0 NA NA NA 5 NA
0 0 0.37 FALSE
410 chr5 120037598 120037808 211
25.72427 5427.821 11492804 11493014 19 4521 1751.900 7.189431e+03 1.073460e+00 1.568777e+03 2.203791e-01 0.000000e+00 -1.270939e+01 -2.196237e+00 -1.499360e+01 -1.000000e+100 0.1349858 FALSE 0.5228326 FALSE PRR16 NM_016644 NP_057728 XM_005272010 XM_005272011 XM_005272012 XP_005272067 XP_005272068 XP_005272069 downstream downstream 237579 NA NA NA 3 NA
222945 205505 0.37 FALSE
411 chr9 118603589 118603753 165
32.83987 5418.578 12091885 12092049 19 2207 3718.084 1.356126e+04 1.046061e+01 5.015252e+03 3.160606e+00 2.818182e-01 -1.034031e+01 -1.435098e+00 -1.206700e+01 -1.555437e+01 0.1352193 FALSE 0.5228326 FALSE LINC00474 NM_021208 NR_024032 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
412 chr14 38664209 38664399 191
28.29785 5404.890 2171096 2171286 3 5592 2224.342 6.826751e+03 7.510471e+00 4.286919e+03 0.000000e+00 5.287958e-01 -9.828080e+00 -6.712581e-01 -1.000000e+100 -1.365620e+01 0.1354527 FALSE 0.5228326 FALSE SSTR1 NM_001049 NP_001040 upstream upstream 12805 NA NA NA 3 NA
5064 1175 0.37 FALSE
413 chr3 191386785 191386962 178
30.32730 5398.260 19032872 19033049 42 5331 3133.029 1.049563e+04 1.490730e+01 5.146649e+03 1.665730e+00 6.289326e+00 -9.459554e+00 -1.028084e+00 -1.262135e+01 -1.070460e+01 0.1357640 FALSE 0.5228326 FALSE PYDC2 NM_001083308 NP_001076777 downstream downstream 207833 NA NA NA 1 NA
293 293 0.37 FALSE
414 chr20 13338673 13338825 153
35.18905 5383.925 1482537 1482689 4 4259 4730.007 1.843032e+04 1.228758e+01 5.207425e+03 0.000000e+00 0.000000e+00 -1.055066e+01 -1.823439e+00 -1.000000e+100 -1.000000e+100 0.1362310 FALSE 0.5228326 FALSE TASP1 NM_017714 NP_060184 XM_006723589 XM_006723590 XP_006723652 XP_006723653 XR_430268 NA NA 0 NA NA NA 10 NA
0 0 0.37 FALSE
415 chr9 85501595 85501730 136
39.57965 5382.832 7688572 7688707 9 2367 6370.220 1.771189e+04 1.577574e+01 1.412264e+04 0.000000e+00 7.977941e-01 -1.013280e+01 -3.267087e-01 -1.000000e+100 -1.443834e+01 0.1362310 FALSE 0.5228326 FALSE RASEF NM_152573 NP_689786 XM_005251730 XM_005251731 XP_005251787 XP_005251788 downstream downstream 176313 NA NA NA 17 NA
83543 80190 0.37 FALSE
416 chr12 14863336 14863484 149
36.04179 5370.226 2906358 2906506 11 5086 4952.109 1.353235e+04 1.091275e+01 1.121514e+04 4.832215e-01 1.661074e+00 -1.027618e+01 -2.709642e-01 -1.477337e+01 -1.299201e+01 0.1365423 FALSE 0.5228326 FALSE GUCY2C NM_004963 NP_004954 upstream upstream 13817 NA NA NA 27 NA
83951 83331 0.37 FALSE
417 chr7 120960479 120960635 157
34.16504 5363.911 13745339 13745495 19 3029 3941.086 1.360541e+04 4.369427e+00 6.094089e+03 6.433121e-01 9.171975e-01 -1.160445e+01 -1.158698e+00 -1.436830e+01 -1.385659e+01 0.1366979 FALSE 0.5228326 FALSE WNT16 NM_016087 NM_057168 NP_057171 NP_476509 upstream upstream 4786 NA NA NA 4 NA
15737 13929 0.37 FALSE
418 chr1 213087313 213087470 158
33.90077 5356.322 27876520 27876677 34 4553 7092.387 2.058882e+04 6.226899e+01 1.476489e+04 1.646835e+01 2.949051e+01 -8.369131e+00 -4.796901e-01 -1.028795e+01 -9.447395e+00 0.1367758 FALSE 0.5228326 FALSE FLVCR1 NM_014053 NP_054772 XR_247024 XR_426770 XR_426771 XR_426772 downstream downstream 55716 NA NA NA 10 NA
41108 36837 0.37 FALSE
419 chr2 64484276 64484432 157
34.07111 5349.165 6921525 6921681 15 2909 4800.822 1.166411e+04 3.662102e+01 1.229713e+04 3.369427e+00 2.882166e+00 -8.315189e+00 7.624490e-02 -1.175729e+01 -1.198264e+01 0.1370870 FALSE 0.5228326 FALSE LINC00309 NR_033837 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
420 chr7 9395038 9395184 147
36.38563 5348.688 1606106 1606252 2 2431 4877.780 1.749031e+04 1.726871e+01 6.881323e+03 0.000000e+00 0.000000e+00 -9.984180e+00 -1.345798e+00 -1.000000e+100 -1.000000e+100 0.1370870 FALSE 0.5228326 FALSE PER4 NR_002790 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
421 chr1 183585580 183585741 162
32.98881 5344.187 24772407 24772568 31 3424 4162.499 1.010962e+04 6.862037e+01 1.063183e+04 5.524691e-01 1.870370e+00 -7.202877e+00 7.266070e-02 -1.415948e+01 -1.240012e+01 0.1373205 FALSE 0.5228326 FALSE ARPC5 NM_001270439 NM_005717 NP_001257368 NP_005708 downstream downstream 19335 NA NA NA 4 NA
9748 8127 0.37 FALSE
422 chr11 27655931 27656101 171
31.19998 5335.197 3887263 3887433 11 5437 3249.988 1.036731e+04 6.939181e+01 5.812947e+03 0.000000e+00 2.953216e-01 -7.223060e+00 -8.346994e-01 -1.000000e+100 -1.509939e+01 0.1373205 FALSE 0.5228326 FALSE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.37 FALSE
423 chr15 35083315 35083496 182
29.30747 5333.959 1975470 1975651 1 5287 13179.582 2.995330e+02 6.103696e+04 4.157761e+03 4.821429e+00 3.988379e+02 7.670824e+00 3.795020e+00 -5.957110e+00 4.130878e-01 0.1373205 FALSE 0.5228326 FALSE ACTC1 NM_005159 NP_005150 inside exon inside 4431 inside exon 0 6 7 inside transcription region
7630 4396 0.37 FALSE
424 chr3 128683547 128683696 150
35.53268 5329.902 12919138 12919287 26 150 4736.724 1.299770e+04 2.784333e+01 1.065618e+04 3.366667e-01 1.563333e+00 -8.866709e+00 -2.865664e-01 -1.523658e+01 -1.302134e+01 0.1375540 FALSE 0.5228326 FALSE KIAA1257 NM_020741 NP_065792 XM_005247667 XM_005247668 XM_005247669 XM_005247670 XP_005247724 XP_005247725 XP_005247726 XP_005247727 inside intron inside 29223 inside intron -6434 7 8 inside transcription region
84210 83005 0.37 FALSE
425 chr6 31133704 31133824 121
43.93091 5315.641 3901107 3901227 9 1641 9630.907 2.004107e+04 3.104132e+01 2.807744e+04 5.371901e-01 4.446281e+00 -9.334554e+00 4.864517e-01 -1.518717e+01 -1.213807e+01 0.1380209 FALSE 0.5228326 FALSE POU5F1 NM_001173531 NM_001285986 NM_001285987 NM_002701 NM_203289 NP_001167002 NP_001272915 NP_001272916 NP_002692 NP_976034 inside exon inside 4627 inside exon 0 2 5 inside transcription region
6337 6019 0.37 FALSE
426 chr11 27652288 27652427 140
37.95229 5313.321 3883620 3883759 11 5437 6053.728 1.218512e+04 4.917857e+01 1.803434e+04 0.000000e+00 0.000000e+00 -7.952875e+00 5.656259e-01 -1.000000e+100 -1.000000e+100 0.1380988 FALSE 0.5228326 FALSE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.37 FALSE
427 chr4 146757769 146757938 170
31.24698 5311.986 13415465 13415634 40 4092 3331.318 1.067485e+04 1.714412e+01 5.959659e+03 2.441177e+00 2.494118e+00 -9.282286e+00 -8.409142e-01 -1.209435e+01 -1.206340e+01 0.1380988 FALSE 0.5228326 FALSE ZNF827 NM_178835 NP_849157 XM_006714094 XM_006714095 XM_006714096 XP_006714157 XP_006714158 XP_006714159 inside intron inside 101669 inside intron -9170 6 14 inside transcription region
177719 175300 0.37 FALSE
428 chr4 157526255 157526425 171
31.01195 5303.043 14347242 14347412 43 3624 3115.675 1.106697e+04 8.973684e+00 4.499842e+03 1.125731e+00 1.459064e+00 -1.026827e+01 -1.298315e+00 -1.326311e+01 -1.288893e+01 0.1387214 FALSE 0.5228326 FALSE PDGFC NM_016205 NP_057289 NR_036641 XM_006714273 XP_006714336 NA NA 0 NA NA NA 8 NA
0 0 0.37 FALSE
429 chr12 48367052 48367269 218
24.32560 5302.981 5755782 5755999 14 2629 3884.031 2.712179e+02 2.291342e+03 9.342431e+01 1.743119e+00 1.676243e+04 3.078668e+00 -1.537582e+00 -7.281637e+00 5.949635e+00 0.1387214 FALSE 0.5228326 FALSE COL2A1 NM_001844 NM_033150 NP_001835 NP_149162 XM_006719242 XP_006719305 inside exon inside 31016 inside exon 0 53 53 overlaps 3'UTR
31537 30914 0.37 FALSE
430 chr6 94543960 94544098 139
38.13810 5301.196 10563437 10563575 18 3908 5868.886 1.481051e+04 3.875540e+01 1.449481e+04 0.000000e+00 3.525180e-01 -8.578008e+00 -3.108430e-02 -1.000000e+100 -1.535856e+01 0.1387214 FALSE 0.5228326 FALSE TSG1 NR_015362 NA NA 0 NA NA NA 10 NA
0 0 0.37 FALSE
431 chrX 86939558 86939744 187
28.30863 5293.713 6793832 6794018 11 4336 2224.223 7.143976e+03 5.243315e+00 3.971110e+03 2.593583e-01 5.267380e-01 -1.041203e+01 -8.471850e-01 -1.474949e+01 -1.372735e+01 0.1390326 FALSE 0.5228326 FALSE KLHL4 NM_019117 NM_057162 NP_061990 NP_476503 downstream downstream 166843 NA NA NA 11 NA
152335 148637 0.37 FALSE
432 chr9 88076183 88076351 169
31.29346 5288.596 7932126 7932294 10 779 3483.841 1.073650e+04 1.454142e+01 6.658219e+03 6.949704e+00 2.997041e+00 -9.528139e+00 -6.893152e-01 -1.059328e+01 -1.180670e+01 0.1394218 FALSE 0.5228326 FALSE AGTPBP1 NM_001286715 NM_001286717 NM_015239 NP_001273644 NP_001273646 NP_056054 XM_005251847 XM_005251848 XM_005251849 XP_005251904 XP_005251905 XP_005251906 downstream downstream 181907 NA NA NA 14 NA
96804 95897 0.37 FALSE
433 chr7 51938982 51939157 176
29.96982 5274.689 5841080 5841255 12 476 3212.677 1.035197e+04 8.565341e+00 5.687438e+03 2.443182e-01 1.516761e+01 -1.023911e+01 -8.640545e-01 -1.537078e+01 -9.414695e+00 0.1401222 FALSE 0.5228326 FALSE COBL NM_001287436 NM_001287438 NM_015198 NP_001274365 NP_001274367 NP_056013 XM_005271750 XM_005271751 XM_005271752 XM_005271753 XM_005271755 XM_005271756 XM_005271757 XM_006715675 XP_005271807 XP_005271808 XP_005271809 XP_005271810 XP_005271812 XP_005271813 XP_005271814 XP_006715738 upstream upstream 554467 NA NA NA 13 NA
300606 299082 0.37 FALSE
434 chr5 107890375 107890531 157
33.51798 5262.323 10352231 10352387 18 2567 4100.371 1.203206e+04 2.470701e+01 8.441869e+03 6.433121e-01 2.573248e+00 -8.927748e+00 -5.112493e-01 -1.419101e+01 -1.219101e+01 0.1411339 FALSE 0.5228326 FALSE FBXL17 NM_001163315 NM_022824 NP_001156787 XM_005272048 XM_005272050 XP_005272105 XP_005272107 XR_427717 upstream upstream 172576 NA NA NA 9 NA
523065 519971 0.37 FALSE
435 chr8 42040237 42040408 172
30.46652 5240.241 4925179 4925350 7 17976 10322.842 1.234477e+02 5.840116e+01 6.428779e+01 5.127684e+04 9.123256e+01 -1.079831e+00 -9.412830e-01 8.698264e+00 -4.362790e-01 0.1424569 FALSE 0.5228326 FALSE PLAT NM_000930 NM_000931 NM_033011 NP_000921 NP_127509 inside exon inside 24786 inside exon 0 5 11 inside transcription region
32958 17192 0.37 FALSE
436 chr9 76702451 76702661 211
24.82263 5237.574 7023431 7023641 5 5530 1614.411 5.493436e+03 1.914692e+00 2.572040e+03 4.663507e+00 0.000000e+00 -1.148638e+01 -1.094796e+00 -1.020208e+01 -1.000000e+100 0.1426126 FALSE 0.5228326 FALSE RORB NM_006914 NP_008845 upstream upstream 409591 NA NA NA 10 NA
189865 187641 0.37 FALSE
437 chr2 75441584 75441737 154
34.00836 5237.287 8786188 8786341 19 2416 3916.603 1.362453e+04 5.529221e+00 5.950789e+03 6.493506e-01 1.519481e+00 -1.126684e+01 -1.195053e+00 -1.435685e+01 -1.313034e+01 0.1426126 FALSE 0.5228326 FALSE TACR1 NM_001058 NM_015727 NP_001049 NP_056542 upstream upstream 14939 NA NA NA 5 NA
153055 149501 0.37 FALSE
438 chr6 131828026 131828171 146
35.86403 5236.148 13904271 13904416 40 2468 5127.049 1.567762e+04 7.438356e+00 9.942072e+03 0.000000e+00 8.113014e+00 -1.104144e+01 -6.570881e-01 -1.000000e+100 -1.091618e+01 0.1426904 FALSE 0.5228326 FALSE ARG1 NM_000045 NM_001244438 NP_000036 NP_001231367 upstream upstream 66173 NA NA NA 7 NA
11121 10524 0.37 FALSE
439 chr6 98232276 98232430 155
33.72918 5228.023 10817036 10817190 20 3504 3902.655 1.298763e+04 5.754839e+00 6.516932e+03 1.335484e+00 1.629032e+00 -1.114007e+01 -9.948728e-01 -1.324749e+01 -1.296083e+01 0.1430795 FALSE 0.5228326 FALSE MIR2113 NR_031579 NA NA 0 NA NA NA 1 NA
0 0 0.37 FALSE
440 chr6 121942411 121942564 154
33.87079 5216.101 13047925 13048078 26 2940 3764.826 1.159419e+04 3.574675e+00 7.225705e+03 9.740260e-02 5.616883e-01 -1.166330e+01 -6.821921e-01 -1.686101e+01 -1.433327e+01 0.1437799 FALSE 0.5228326 FALSE GJA1 NM_000165 NP_000156 downstream downstream 185666 NA NA NA 2 NA
14128 1148 0.37 FALSE
441 chr15 101615404 101615520 117
44.57300 5215.041 11600177 11600293 15 117 8255.841 2.418640e+04 4.700855e-01 1.709221e+04 1.282051e-01 0.000000e+00 -1.565091e+01 -5.008576e-01 -1.752538e+01 -1.000000e+100 0.1438577 FALSE 0.5228326 FALSE LRRK1 NM_024652 NP_078928 XM_005254979 XP_005255036 downstream downstream 155944 NA NA NA 34 NA
150857 144215 0.37 FALSE
442 chr1 209626669 209626824 156
33.40084 5210.531 27369918 27370073 33 4569 7082.587 2.062527e+04 5.842308e+01 1.468115e+04 1.532372e+01 3.276923e+01 -8.463659e+00 -4.904477e-01 -1.039443e+01 -9.297855e+00 0.1442469 FALSE 0.5228326 FALSE MIR205HG NM_001104548 NP_001098018 XM_006711486 XP_006711549 downstream downstream 24501 NA NA NA 4 NA
3724 3051 0.37 FALSE
443 chr2 64482675 64482833 159
32.65265 5191.771 6919924 6920082 15 2909 4298.613 1.158726e+04 5.078302e+01 9.847346e+03 3.176101e-01 7.355346e+00 -7.833978e+00 -2.347327e-01 -1.515492e+01 -1.062146e+01 0.1452586 FALSE 0.5228326 FALSE LINC00309 NR_033837 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
444 chr4 157523994 157524128 135
38.43270 5188.414 14345267 14345401 43 3624 7741.548 1.476104e+04 8.705185e+01 2.385863e+04 0.000000e+00 1.014815e+00 -7.405704e+00 6.927170e-01 -1.000000e+100 -1.382829e+01 0.1454142 FALSE 0.5228326 FALSE PDGFC NM_016205 NP_057289 NR_036641 XM_006714273 XP_006714336 NA NA 0 NA NA NA 8 NA
0 0 0.37 FALSE
445 chr14 47576043 47576205 163
31.82270 5187.101 2716423 2716585 7 4412 3427.111 9.737353e+03 1.648466e+01 7.378003e+03 1.546012e+00 2.168712e+00 -9.206261e+00 -4.002992e-01 -1.262076e+01 -1.213248e+01 0.1454142 FALSE 0.5228326 FALSE MDGA2 NM_001113498 NM_182830 NP_001106970 NP_878250 NR_103766 XM_006720068 XP_006720131 inside intron inside 519523 inside intron 9717 6 15 5' UTR
755585 189427 0.37 FALSE
446 chrX 124527068 124527218 151
34.33246 5184.202 10075219 10075369 30 5372 3859.974 1.203386e+04 1.996689e+00 7.262672e+03 0.000000e+00 1.337748e+00 -1.255720e+01 -7.285272e-01 -1.000000e+100 -1.313501e+01 0.1455699 FALSE 0.5228326 FALSE LOC100129520 NM_001195272 NP_001182201 XM_005262352 XP_005262409 downstream downstream 73099 NA NA NA 1 NA
2981 2981 0.37 FALSE
447 chr10 55928206 55928397 192
26.98071 5180.295 5619804 5619995 11 4015 2083.796 6.199388e+03 9.346354e+00 4.205115e+03 0.000000e+00 5.130208e+00 -9.373506e+00 -5.599807e-01 -1.000000e+100 -1.023889e+01 0.1457255 FALSE 0.5228326 FALSE PCDH15 NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_033056 NP_001136235 NP_001136236 NP_001136237 NP_001136238 NP_001136239 NP_001136240 NP_001136241 NP_001136242 NP_001136243 NP_001136244 NP_001136245 NP_149045 XM_006717950 XP_006718013 inside intron inside 632654 inside intron -14807 13 21 inside transcription region
806711 668631 0.37 FALSE
448 chr4 146759030 146759211 182
28.42292 5172.972 13416679 13416860 40 4092 3089.326 1.006311e+04 2.363187e+01 5.345555e+03 6.087912e+00 8.244506e+00 -8.734127e+00 -9.126650e-01 -1.069084e+01 -1.025336e+01 0.1461925 FALSE 0.5228326 FALSE ZNF827 NM_178835 NP_849157 XM_006714094 XM_006714095 XM_006714096 XP_006714157 XP_006714158 XP_006714159 inside intron inside 100396 inside intron -7897 6 14 inside transcription region
177719 175300 0.37 FALSE
449 chr1 99979577 99979761 185
27.93636 5168.226 14810087 14810271 24 3707 2300.211 8.207873e+03 8.208108e+00 3.282068e+03 1.332432e+00 1.575676e+00 -9.965743e+00 -1.322404e+00 -1.258873e+01 -1.234682e+01 0.1463481 FALSE 0.5228326 FALSE PALMD NM_017734 NP_060204 upstream upstream 131670 NA NA NA 8 NA
48666 47744 0.37 FALSE
450 chr3 46620722 46620856 135
38.13678 5148.465 5031726 5031860 11 4701 5325.888 1.489700e+04 8.962963e-01 1.173155e+04 0.000000e+00 0.000000e+00 -1.402069e+01 -3.446281e-01 -1.000000e+100 -1.000000e+100 0.1473598 FALSE 0.5228326 FALSE LRRC2 NM_024512 NM_024750 NP_078788 XM_006713332 XP_006713395 inside intron inside 716 inside intron -571 1 9 5' UTR
64694 32577 0.37 FALSE
451 chr3 46621441 46621550 110
46.76143 5143.758 5032445 5032554 11 4701 10162.689 2.846715e+04 1.868182e+00 2.234443e+04 0.000000e+00 0.000000e+00 -1.389538e+01 -3.493825e-01 -1.000000e+100 -1.000000e+100 0.1475933 FALSE 0.5228326 FALSE LRRC2 NM_024512 NM_024750 NP_078788 XM_006713332 XP_006713395 inside exon inside 22 inside exon 0 1 9 5' UTR
64694 32577 0.37 FALSE
452 chr13 89165806 89165957 152
33.82351 5141.173 5638792 5638943 25 4104 3963.697 1.359509e+04 7.720395e+00 6.212500e+03 1.615132e+00 1.559211e+00 -1.078212e+01 -1.129840e+00 -1.303915e+01 -1.308998e+01 0.1477489 FALSE 0.5228326 FALSE LINC00433 NR_047021 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
453 chr8 115256752 115256897 146
35.19368 5138.278 10959032 10959177 25 3330 4514.747 1.326747e+04 2.756849e+00 9.298685e+03 0.000000e+00 4.821918e+00 -1.223259e+01 -5.127950e-01 -1.000000e+100 -1.142600e+01 0.1479824 FALSE 0.5228326 FALSE CSMD3 NM_052900 NM_198123 NM_198124 NP_443132 NP_937756 NP_937757 upstream upstream 807510 NA NA NA 71 NA
1214083 1212083 0.37 FALSE
454 chr19 54335701 54335895 195
26.31560 5131.542 14736927 14737121 10 5816 2039.200 8.250872e+03 1.090769e+01 1.929659e+03 0.000000e+00 4.561539e+00 -9.563057e+00 -2.096201e+00 -1.000000e+100 -1.082081e+01 0.1482937 FALSE 0.5228326 FALSE NLRP12 NM_001277126 NM_001277129 NM_033297 NM_144687 NP_001264055 NP_001264058 NP_653288 upstream upstream 8044 NA NA NA 10 NA
30802 30125 0.37 FALSE
455 chr9 88076816 88076961 146
35.13702 5130.005 7932759 7932904 10 779 4688.518 1.743442e+04 7.787671e+00 5.995267e+03 3.698630e-01 4.743151e+00 -1.112846e+01 -1.540042e+00 -1.552459e+01 -1.184381e+01 0.1482937 FALSE 0.5228326 FALSE AGTPBP1 NM_001286715 NM_001286717 NM_015239 NP_001273644 NP_001273646 NP_056054 XM_005251847 XM_005251848 XM_005251849 XP_005251904 XP_005251905 XP_005251906 downstream downstream 181297 NA NA NA 14 NA
96804 95897 0.37 FALSE
456 chr1 215588727 215588866 140
36.63368 5128.716 28108538 28108677 35 4889 5159.356 1.353791e+04 4.019286e+01 1.221867e+04 0.000000e+00 0.000000e+00 -8.395850e+00 -1.479173e-01 -1.000000e+100 -1.000000e+100 0.1482937 FALSE 0.5228326 FALSE KCTD3 NM_016121 NP_057205 XM_005273156 XM_005273157 XM_005273158 XP_005273213 XP_005273214 XP_005273215 upstream upstream 151869 NA NA NA 18 NA
54414 52931 0.37 FALSE
457 chr1 230744198 230744331 134
38.27205 5128.455 30168058 30168191 46 134 5322.431 1.636809e+04 1.503731e+00 1.024256e+04 0.000000e+00 0.000000e+00 -1.341005e+01 -6.763100e-01 -1.000000e+100 -1.000000e+100 0.1482937 FALSE 0.5228326 FALSE COG2 NM_001145036 NM_007357 NP_001138508 NP_031383 upstream upstream 33871 NA NA NA 18 NA
51529 50786 0.37 FALSE
458 chr3 125584389 125584536 148
34.54577 5112.774 12431883 12432030 25 926 4187.158 1.672652e+04 6.317568e-01 4.206253e+03 6.959459e-01 1.692568e+00 -1.469241e+01 -1.991529e+00 -1.455280e+01 -1.327064e+01 0.1489941 FALSE 0.5228326 FALSE FAM86JP NR_024250 NR_024251 NA NA 0 NA NA NA 5 NA
0 0 0.37 FALSE
459 chr16 9767312 9767479 168
30.42574 5111.525 2220779 2220946 4 8636 3097.167 1.325230e+04 6.011905e-01 2.232935e+03 0.000000e+00 0.000000e+00 -1.442806e+01 -2.569230e+00 -1.000000e+100 -1.000000e+100 0.1489941 FALSE 0.5228326 FALSE GRIN2A NM_000833 NM_001134407 NM_001134408 NP_000824 NP_001127879 NP_001127880 XM_005255267 XM_005255268 XP_005255324 XP_005255325 downstream downstream 508784 NA NA NA 13 NA
428998 417262 0.37 FALSE
460 chrX 4811221 4811376 156
32.74111 5107.613 716998 717153 3 5024 3687.783 1.339104e+04 4.711538e+00 5.038455e+03 0.000000e+00 4.705128e+00 -1.147278e+01 -1.410215e+00 -1.000000e+100 -1.147475e+01 0.1490719 FALSE 0.5228326 FALSE NLGN4X NM_001282145 NM_001282146 NM_020742 NM_181332 NP_001269074 NP_001269075 NP_065793 NP_851849 XM_005274564 XM_005274565 XM_005274566 XM_005274568 XM_006724504 XP_005274621 XP_005274622 XP_005274623 XP_005274625 XP_006724567 downstream downstream 1258436 NA NA NA 6 NA
261729 258649 0.37 FALSE
461 chr9 118601996 118602155 160
31.91279 5106.046 12090292 12090451 19 2207 5197.528 1.564444e+04 3.037187e+01 1.027892e+04 1.400000e+01 1.990312e+01 -9.008698e+00 -6.059604e-01 -1.012601e+01 -9.618439e+00 0.1491498 FALSE 0.5228326 FALSE LINC00474 NM_021208 NR_024032 NA NA 0 NA NA NA 3 NA
0 0 0.37 FALSE
462 chr9 90027563 90027737 175
29.15573 5102.254 8213280 8213454 12 5446 2329.389 6.957891e+03 2.228571e+00 4.686823e+03 0.000000e+00 0.000000e+00 -1.160832e+01 -5.700399e-01 -1.000000e+100 -1.000000e+100 0.1495389 FALSE 0.5228326 FALSE DAPK1 NM_001288729 NM_001288730 NM_001288731 NM_004938 NP_001275658 NP_001275659 NP_001275660 NP_004929 XM_005251757 XM_006716988 XP_005251814 XP_006717051 upstream upstream 84921 NA NA NA 26 NA
210891 208286 0.37 FALSE
463 chr9 85503692 85503849 158
32.25328 5096.019 7690669 7690826 9 2367 3788.093 1.194089e+04 1.691139e+01 6.976766e+03 1.829114e+00 4.072785e+00 -9.463699e+00 -7.752796e-01 -1.267248e+01 -1.151761e+01 0.1498502 FALSE 0.5228326 FALSE RASEF NM_152573 NP_689786 XM_005251730 XM_005251731 XP_005251787 XP_005251788 downstream downstream 174194 NA NA NA 17 NA
83543 80190 0.37 FALSE
464 chr1 232365873 232366026 154
33.08968 5095.810 30485312 30485465 49 2182 7141.016 2.011139e+04 6.522078e+01 1.548103e+04 1.901623e+01 2.842532e+01 -8.268465e+00 -3.775114e-01 -1.004657e+01 -9.466620e+00 0.1499280 FALSE 0.5228326 FALSE SIPA1L2 NM_020808 NP_065859 XM_005273209 XM_005273211 XM_005273212 XM_005273213 XM_005273214 XM_006711798 XM_006711799 XP_005273266 XP_005273268 XP_005273269 XP_005273270 XP_005273271 XP_006711861 XP_006711862 downstream downstream 232137 NA NA NA 14 NA
64451 63107 0.37 FALSE
465 chrX 113838518 113838680 163
31.23774 5091.751 9205616 9205778 25 4367 3102.779 9.577672e+03 7.266871e+00 5.926730e+03 3.098160e-01 1.917178e+00 -1.036412e+01 -6.924386e-01 -1.491598e+01 -1.228648e+01 0.1504728 FALSE 0.5228326 FALSE HTR2C NM_000868 NM_001256760 NM_001256761 NP_000859 NP_001243689 NP_001243690 inside intron inside 19967 inside intron 9593 2 7 5' UTR
326073 180632 0.37 FALSE
466 chr4 80475635 80475785 151
33.66067 5082.762 7389638 7389788 16 2580 7254.020 2.082752e+04 6.385762e+01 1.533016e+04 2.239404e+01 2.617219e+01 -8.349416e+00 -4.421182e-01 -9.861160e+00 -9.636241e+00 0.1513288 FALSE 0.5228326 FALSE LINC00989 NR_038826 NA NA 0 NA NA NA 4 NA
0 0 0.37 FALSE
467 chr5 121812906 121813078 173
29.34795 5077.195 11609158 11609330 21 3455 2770.842 8.652702e+03 7.708093e+00 5.187974e+03 5.838150e-01 5.242775e+00 -1.013256e+01 -7.379795e-01 -1.385535e+01 -1.068860e+01 0.1514845 FALSE 0.5228326 FALSE MGC32805 NR_051996 NA NA 0 NA NA NA 6 NA
0 0 0.37 FALSE
468 chr16 13447965 13448113 149
34.07504 5077.180 2742289 2742437 5 5109 4107.481 1.525142e+04 4.496644e+00 5.279238e+03 1.570470e+00 6.778523e-01 -1.172781e+01 -1.530542e+00 -1.324546e+01 -1.445761e+01 0.1514845 FALSE 0.5228326 FALSE SHISA9 NM_001145204 NM_001145205 NP_001138676 NP_001138677 XM_005255539 XP_005255596 downstream downstream 452488 NA NA NA 5 NA
338796 333344 0.37 FALSE
469 chr8 72590857 72591003 147
34.40251 5057.170 7346903 7347049 11 5162 3902.184 1.480539e+04 2.574830e+00 4.702956e+03 0.000000e+00 0.000000e+00 -1.248936e+01 -1.654483e+00 -1.000000e+100 -1.000000e+100 0.1525740 FALSE 0.5228326 FALSE MSC NM_005098 NP_005089 downstream downstream 165728 NA NA NA 2 NA
2954 1517 0.37 FALSE
470 chr6 120783847 120783983 137
36.87818 5052.311 12972672 12972808 25 2194 5452.920 2.083030e+04 8.127737e+00 6.419015e+03 4.167883e+00 2.992701e+00 -1.132354e+01 -1.698260e+00 -1.228708e+01 -1.276495e+01 0.1528075 FALSE 0.5228326 FALSE TBC1D32 NM_152730 NP_689943 NR_104452 XM_005266861 XP_005266918 downstream downstream 871661 NA NA NA 32 NA
255017 253659 0.37 FALSE
471 chr1 213083415 213083556 142
35.56100 5049.663 27873112 27873253 34 4553 4602.649 1.226246e+04 4.862676e+00 1.074289e+04 7.640845e-01 2.267606e+00 -1.130021e+01 -1.908668e-01 -1.397016e+01 -1.240079e+01 0.1529632 FALSE 0.5228326 FALSE FLVCR1 NM_014053 NP_054772 XR_247024 XR_426770 XR_426771 XR_426772 downstream downstream 51818 NA NA NA 10 NA
41108 36837 0.37 FALSE
472 chr3 186894026 186894178 153
32.97949 5045.861 18778385 18778537 40 5076 3667.052 1.271700e+04 5.532680e+00 5.609794e+03 1.303922e+00 1.630719e+00 -1.116649e+01 -1.180738e+00 -1.325161e+01 -1.292896e+01 0.1535079 FALSE 0.5228326 FALSE RTP1 NM_153708 NP_714919 upstream upstream 21096 NA NA NA 2 NA
3979 2554 0.37 FALSE
473 chr5 5520703 5520838 136
37.08730 5043.873 713580 713715 3 136 5300.716 2.031335e+04 6.286765e+00 6.178449e+03 4.775735e+00 7.242647e-01 -1.165782e+01 -1.717111e+00 -1.205442e+01 -1.477555e+01 0.1535857 FALSE 0.5228326 FALSE KIAA0947 NM_015325 NP_056140 downstream downstream 97917 NA NA NA 19 NA
67561 66414 0.37 FALSE
474 chr9 12949586 12949757 172
29.29830 5039.307 1178036 1178207 1 5083 2970.685 9.840890e+03 3.825581e+00 4.993006e+03 1.267442e+00 1.443895e+01 -1.132889e+01 -9.788801e-01 -1.292265e+01 -9.412679e+00 0.1541305 FALSE 0.5228326 FALSE LURAP1L NM_203403 NP_981948 XM_005251443 XP_005251500 downstream downstream 174574 NA NA NA 2 NA
48047 46044 0.37 FALSE
475 chr22 32901358 32901520 163
30.88618 5034.448 3353975 3354137 2 163 4074.898 1.257800e+04 2.004908e+01 7.751163e+03 1.108896e+01 1.419018e+01 -9.293151e+00 -6.984179e-01 -1.014756e+01 -9.791794e+00 0.1543640 FALSE 0.5228326 FALSE FBXO7 NM_001033024 NM_001257990 NM_012179 NP_001028196 NP_001244919 NP_036311 downstream downstream 30651 NA NA NA 9 NA
24111 23527 0.37 FALSE
476 chr4 95008729 95008889 161
31.24308 5030.136 8965092 8965252 27 2519 3462.618 1.063182e+04 1.170807e+01 6.657851e+03 6.295031e+00 5.419255e+00 -9.826669e+00 -6.752597e-01 -1.072189e+01 -1.093801e+01 0.1546753 FALSE 0.5228326 FALSE SMARCAD1 NM_001128429 NM_001128430 NM_001254949 NM_020159 NP_001121901 NP_001121902 NP_001241878 NP_064544 NR_045644 XM_006714275 XM_006714276 XM_006714277 XP_006714338 XP_006714339 XP_006714340 upstream upstream 119870 NA NA NA 24 NA
83684 81139 0.37 FALSE
477 chr12 11617992 11618135 144
34.86781 5020.965 2389631 2389774 8 2899 4829.208 1.004690e+04 6.287500e+01 1.403558e+04 3.090278e-01 3.715278e-01 -7.320048e+00 4.823387e-01 -1.498865e+01 -1.472292e+01 0.1552200 FALSE 0.5228326 FALSE PRB2 NM_006248 NP_006239 upstream upstream 69494 NA NA NA 4 NA
4024 2702 0.37 FALSE
478 chr21 42330522 42330680 159
31.57230 5019.996 2187821 2187979 1 2438 3167.812 1.175639e+04 6.669811e+00 4.075094e+03 0.000000e+00 9.088050e-01 -1.078351e+01 -1.528539e+00 -1.000000e+100 -1.365911e+01 0.1552979 FALSE 0.5228326 FALSE DSCAM NM_001271534 NM_001389 NP_001258463 NP_001380 NR_073202 XM_006723975 XP_006724038 upstream upstream 111483 NA NA NA 33 NA
834696 833626 0.37 FALSE
479 chr8 42044916 42045090 175
28.66386 5016.176 4929858 4930032 7 17976 5430.797 6.945143e+01 3.235143e+01 3.155429e+01 2.698386e+04 3.676857e+01 -1.102175e+00 -1.138168e+00 8.601876e+00 -9.175312e-01 0.1556092 FALSE 0.5228326 FALSE PLAT NM_000930 NM_000931 NM_033011 NP_000921 NP_127509 inside intron inside 20104 inside intron -1362 4 11 inside transcription region
32958 17192 0.37 FALSE
480 chr4 57897327 57897502 176
28.43535 5004.621 5695296 5695471 10 2151 31497.159 1.627642e+02 3.169069e+04 1.530682e+02 1.252948e+05 1.845000e+02 7.605132e+00 -8.860900e-02 9.588327e+00 1.808374e-01 0.1561539 FALSE 0.5228326 FALSE POLR2B NM_000938 NP_000929 overlaps 3' overlaps 3' 21602 inside exon 0 15 15 3'UTR
21609 20510 0.37 FALSE
481 chr4 104477840 104478004 165
30.27312 4995.064 9868121 9868285 29 1268 2964.185 9.357442e+03 9.715151e+00 5.448500e+03 2.381818e+00 2.884848e+00 -9.911662e+00 -7.802552e-01 -1.193984e+01 -1.166340e+01 0.1565431 FALSE 0.5228326 FALSE TACR3 NM_001059 NP_001050 downstream downstream 162969 NA NA NA 5 NA
130348 129993 0.37 FALSE
482 chr20 36756871 36757069 199
25.09139 4993.186 4127588 4127786 5 1818 5495.297 1.388693e+01 8.946515e+03 1.682663e+01 1.848050e+04 1.875628e+01 9.331454e+00 2.770184e-01 1.037806e+01 4.336456e-01 0.1566209 FALSE 0.5228326 FALSE TGM2 NM_004613 NM_198951 NP_004604 NP_945189 inside exon inside 36631 inside exon 0 12 12 3'UTR
36836 34979 0.37 FALSE
483 chr2 77319554 77319733 180
27.72747 4990.945 8907107 8907286 21 5816 2225.101 9.145433e+03 6.666667e+00 1.973406e+03 0.000000e+00 0.000000e+00 -1.042187e+01 -2.212364e+00 -1.000000e+100 -1.000000e+100 0.1570100 FALSE 0.5228326 FALSE LRRTM4 NM_001134745 NM_001282924 NM_001282928 NM_024993 NP_001128217 NP_001269853 NP_001269857 NP_079269 inside intron inside 429769 inside intron 343512 4 4 inside transcription region
774652 772976 0.37 FALSE
484 chr3 186895687 186895843 157
31.76940 4987.795 18780046 18780202 40 5076 3217.250 1.231121e+04 8.273885e+00 3.766446e+03 0.000000e+00 3.216561e-01 -1.053912e+01 -1.708697e+00 -1.000000e+100 -1.522409e+01 0.1573213 FALSE 0.5228326 FALSE RTP1 NM_153708 NP_714919 upstream upstream 19431 NA NA NA 2 NA
3979 2554 0.37 FALSE
485 chr22 38075610 38075804 195
25.53773 4979.857 4027255 4027449 3 2798 16911.703 5.408564e+02 1.024385e+02 3.339000e+02 8.287124e+04 7.100821e+02 -2.400488e+00 -6.958295e-01 7.259482e+00 3.927401e-01 0.1576326 FALSE 0.5228326 FALSE LGALS1 NM_002305 NP_002296 inside exon inside 3997 inside exon 0 4 4 overlaps 3'UTR
4196 4046 0.37 FALSE
486 chr15 37531346 37531501 156
31.90747 4977.566 2157678 2157833 4 156 3466.253 9.436237e+03 1.887179e+01 7.871439e+03 3.782051e+00 9.326923e-01 -8.965836e+00 -2.615843e-01 -1.128483e+01 -1.330452e+01 0.1578661 FALSE 0.5228326 FALSE MEIS2 NM_001220482 NM_002399 NM_020149 NM_170674 NM_170675 NM_170676 NM_170677 NM_172315 NM_172316 NP_001207411 NP_002390 NP_733774 NP_733775 NP_733776 NP_733777 NP_758526 NP_758527 NR_051953 XM_006720522 XM_006720523 XM_006720524 XM_006720525 XM_006720526 XM_006720527 XM_006720528 XM_006720529 XP_006720585 XP_006720586 XP_006720587 XP_006720588 XP_006720589 XP_006720590 XP_006720591 XP_006720592 upstream upstream 137846 NA NA NA 13 NA
210278 207293 0.37 FALSE
487 chr11 27638254 27638432 179
27.80569 4977.219 3869586 3869764 9 3784 2362.928 7.283282e+03 2.571788e+01 4.501972e+03 3.206704e+00 4.608939e-01 -8.145673e+00 -6.940316e-01 -1.114928e+01 -1.394787e+01 0.1579439 FALSE 0.5228326 FALSE BDNF-AS NR_002832 NR_033312 NR_033313 NR_033314 NR_033315 NA NA 0 NA NA NA 7 NA
0 0 0.37 FALSE
488 chr7 24331282 24331475 194
25.63238 4972.681 2945292 2945485 5 2336 3434.131 4.728351e+01 2.515206e+01 2.695644e+02 1.682639e+04 2.262887e+00 -9.106603e-01 2.511221e+00 8.475173e+00 -4.385101e+00 0.1580995 FALSE 0.5228326 FALSE NPY NM_000905 NP_000896 inside exon inside 7475 inside exon 0 4 4 overlaps 3'UTR
7677 6446 0.37 FALSE
489 chr2 8015757 8015920 164
30.23654 4958.792 589502 589665 2 5921 3380.902 1.033791e+04 1.622256e+01 6.533223e+03 7.564024e+00 9.591463e+00 -9.315727e+00 -6.620777e-01 -1.041650e+01 -1.007391e+01 0.1592669 FALSE 0.5228326 FALSE LINC00298 NR_015405 NA NA 0 NA NA NA 4 NA
0 0 0.37 FALSE
490 chr4 79635514 79635661 148
33.41849 4945.936 7317434 7317581 15 3968 6942.799 2.001605e+04 6.030743e+01 1.459057e+04 2.010135e+01 2.696959e+01 -8.374606e+00 -4.561208e-01 -9.959649e+00 -9.535608e+00 0.1601230 FALSE 0.5228326 FALSE LINC01094 NR_038303 NR_038304 NR_038305 NR_038306 NR_038307 NR_038308 NA NA 0 NA NA NA 5 NA
0 0 0.37 FALSE
491 chr22 28139251 28139420 170
29.07408 4942.593 2303165 2303334 1 1668 3166.511 1.024273e+04 6.658823e+00 5.560485e+03 7.397059e+00 1.528529e+01 -1.058704e+01 -8.813171e-01 -1.043536e+01 -9.388240e+00 0.1602786 FALSE 0.5228326 FALSE MN1 NM_002430 NP_002421 downstream downstream 48451 NA NA NA 2 NA
43606 40907 0.37 FALSE
492 chr19 5552540 5552676 137
36.02013 4934.757 1919902 1920038 1 1816 4925.164 1.508032e+04 2.333212e+01 9.520631e+03 3.686131e-01 1.167883e+00 -9.336134e+00 -6.635380e-01 -1.532020e+01 -1.365648e+01 0.1605121 FALSE 0.5228326 FALSE TINCR NM_153375 NR_027064 downstream downstream 15329 NA NA NA 3 NA
9827 455 0.37 FALSE
493 chr4 146623983 146624130 148
33.29536 4927.713 13368078 13368225 39 3131 6175.184 1.722780e+04 5.785473e+01 1.355876e+04 1.334797e+01 1.816554e+01 -8.218088e+00 -3.455134e-01 -1.033390e+01 -9.889318e+00 0.1608234 FALSE 0.5228326 FALSE C4orf51 NM_001080531 NP_001074000 XM_006714289 XP_006714352 inside intron inside 22627 inside intron -6199 2 6 inside transcription region
52592 52356 0.38 FALSE
494 chr6 126024410 126024576 167
29.38551 4907.380 13417450 13417616 35 5548 2641.813 7.607162e+03 1.717665e+01 5.582389e+03 1.341317e+00 9.970060e-01 -8.790766e+00 -4.464756e-01 -1.246949e+01 -1.289747e+01 0.1629246 FALSE 0.5228326 FALSE RP1-293L8.2 NR_038906 NA NA 0 NA NA NA 4 NA
0 0 0.38 FALSE
495 chr1 62676900 62677100 201
24.37239 4898.850 11180297 11180497 12 5031 5025.683 9.829711e+03 1.621729e+03 1.322866e+04 0.000000e+00 4.483159e+02 -2.599616e+00 4.284456e-01 -1.000000e+100 -4.454561e+00 0.1631581 FALSE 0.5228326 FALSE L1TD1 NM_001164835 NM_019079 NP_001158307 NP_061952 inside exon inside 16426 inside exon 0 5 5 overlaps 3'UTR
17527 4743 0.38 FALSE
496 chr3 78373034 78373198 165
29.66519 4894.756 8709082 8709246 15 2429 2740.307 8.319452e+03 2.758485e+01 5.353130e+03 1.369697e+00 0.000000e+00 -8.236469e+00 -6.361056e-01 -1.256842e+01 -1.000000e+100 0.1635472 FALSE 0.5228326 FALSE ROBO1 NM_001145845 NM_002941 NM_133631 NP_001139317 NP_002932 NP_598334 XM_006713276 XM_006713277 XM_006713278 XP_006713339 XP_006713340 XP_006713341 downstream downstream 364724 NA NA NA 23 NA
91534 60790 0.38 FALSE
497 chr3 935099 935230 132
37.07277 4893.606 37179 37310 1 132 5847.203 1.090997e+04 7.555682e+01 1.825049e+04 0.000000e+00 0.000000e+00 -7.173869e+00 7.422880e-01 -1.000000e+100 -1.000000e+100 0.1635472 FALSE 0.5228326 FALSE CNTN6 NM_001289080 NM_001289081 NM_014461 NP_001276009 NP_001276010 NP_055276 XM_005265058 XP_005265115 upstream upstream 199390 NA NA NA 8 NA
205433 124716 0.38 FALSE
498 chr13 89167451 89167612 162
30.18837 4890.516 5640105 5640266 25 4104 2810.256 1.078954e+04 1.116667e+01 3.250259e+03 0.000000e+00 3.117284e-01 -9.916220e+00 -1.731007e+00 -1.000000e+100 -1.507898e+01 0.1637807 FALSE 0.5228326 FALSE LINC00433 NR_047021 NA NA 0 NA NA NA 3 NA
0 0 0.38 FALSE
499 chr20 13342333 13342490 158
30.94373 4889.110 1486197 1486354 4 4259 2937.411 9.991494e+03 1.832278e+00 4.691547e+03 2.689873e-01 1.911392e+00 -1.241285e+01 -1.090637e+00 -1.518087e+01 -1.235186e+01 0.1639363 FALSE 0.5228326 FALSE TASP1 NM_017714 NP_060184 XM_006723589 XM_006723590 XP_006723652 XP_006723653 XR_430268 NA NA 0 NA NA NA 10 NA
0 0 0.38 FALSE
500 chr10 78582804 78582946 143
34.17976 4887.705 7906606 7906748 14 1989 5011.389 1.363992e+04 4.394056e+01 1.136314e+04 5.416084e+00 4.524476e+00 -8.278066e+00 -2.634732e-01 -1.129830e+01 -1.155780e+01 0.1640142 FALSE 0.5228326 FALSE KCNMA1 NM_001014797 NM_001161352 NM_001161353 NM_001271518 NM_001271519 NM_001271520 NM_001271521 NM_001271522 NM_002247 NP_001014797 NP_001154824 NP_001154825 NP_001258447 NP_001258448 NP_001258449 NP_001258450 NP_001258451 NP_002238 XM_005269776 XM_005269778 XM_005269779 XM_005269780 XM_005269781 XM_005269785 XM_005269787 XM_005269789 XM_005269792 XM_005269795 XM_005269796 XM_005269797 XM_005269800 XM_005269801 XM_005269803 XM_005269804 XM_006717821 XM_006717822 XM_006717823 XM_006717824 XM_006717825 XM_006717826 XM_006717827 XM_006717828 XM_006717829 XM_006717830 XP_005269833 XP_005269835 XP_005269836 XP_005269837 XP_005269838 XP_005269842 XP_005269844 XP_005269846 XP_005269849 XP_005269852 XP_005269853 XP_005269854 XP_005269857 XP_005269858 XP_005269860 XP_005269861 XP_006717884 XP_006717885 XP_006717886 XP_006717887 XP_006717888 XP_006717889 XP_006717890 XP_006717891 XP_006717892 XP_006717893 downstream downstream 814631 NA NA NA 29 NA
768218 759773 0.38 FALSE

Best region clusters

The following plots were made using ggbio (Yin, Cook, and Lawrence, 2012) which in turn uses ggplot2 (Wickham, 2009). For more details check plotCluster() in derfinder (Collado-Torres, Frazee, Jaffe, and Leek, 2014).

Plots

## Select clusters by cluster area
df <- data.frame(area = fullRegions$area,
    clusterChr = paste0(as.integer(fullRegions$cluster), 
    chr = as.character(seqnames(fullRegions))))
regionClustAreas <- tapply(df$area, df$clusterChr, sum)
bestArea <- sapply(names(head(sort(regionClustAreas, decreasing=TRUE),
    nBestClusters)), function(y) { which(df$clusterChr == y)[[1]]})

## Graphical setup: ideograms 
if(hg19 & is.null(p.ideos)) {
    ## Load ideogram info
    data(hg19IdeogramCyto, package = 'biovizBase')
    ideos.set <- as.character(unique(seqnames(fullRegions[bestArea])))
    p.ideos <- lapply(ideos.set, function(xx) { 
        plotIdeogram(hg19IdeogramCyto, mapSeqlevels(xx, 'UCSC'))
    })
    names(p.ideos) <- ideos.set
} else {
    stopifnot(!is.null(p.ideos))
}

## Graphical setup: main plotting function
regionClusterPlot <- function(idx, tUse='qval') {
    ## Chr specific selections
    chr <- as.character(seqnames(fullRegions[idx]))
    p.ideo <- p.ideos[[chr]]
    covInfo <- fullCov[[chr]]
    
    ## Make the plot
    p <- plotCluster(idx, regions = fullRegions, annotation = regions.df,
        coverageInfo = covInfo, groupInfo = optionsStats$groupInfo,
        titleUse = tUse, txdb = txdb, p.ideogram = p.ideo)
    print(p)
    rm(p.ideo, covInfo)
    
    return(invisible(TRUE))
}

Below are the best 20 region clusters ordered by cluster area (sum of the area of regions inside a cluster). The region with the highest area in the cluster is shown with a red bar.

## Genome plots
for(idx in bestArea) {
    regionClusterPlot(idx, ifelse(nullExist, ifelse(fwerExist, 'fwer', 'qval'), 'none'))
}

Permutations

Below is the information on how the samples were permutted.

Summary

## Get the permutation information
nSamples <- seq_len(length(optionsStats$groupInfo))
permuteInfo <- lapply(seeds, function(x) {
    set.seed(x)
    idx <- sample(nSamples)
    data.frame(optionsStats$groupInfo[idx])
})
permuteInfo <- cbind(data.frame(optionsStats$groupInfo), do.call(cbind, permuteInfo))
colnames(permuteInfo) <- c('original', paste0('perm', seq_len(optionsStats$nPermute)))
## The raw information
# permuteInfo

n <- names(table(permuteInfo[, 2]))
permuteDetail <- data.frame(matrix(NA, nrow=optionsStats$nPermute * length(n),
    ncol = 2 + length(n)))
permuteDetail[, 1] <- rep(seq_len(optionsStats$nPermute), each=length(n))
permuteDetail[, 2] <- rep(n, optionsStats$nPermute)
colnames(permuteDetail) <- c('permutation', 'group', as.character(n))
l <- 1
m <- 3:ncol(permuteDetail)
for(j in n) {
    k <- which(permuteInfo[, 1] == j)
    for(i in 2:(optionsStats$nPermute + 1)) {
        permuteDetail[l, m] <- table(permuteInfo[k, i])
        l <- l + 1
    }
}

## How many permutations resulted in the original grouping rearrangement
obs <- diag(length(m)) * sapply(
    permuteDetail$group[ permuteDetail$permutation == 1], function(n) {
  sum(optionsStats$groupInfo == n)
})
sameAsObs <- sapply(seq_len(length(seeds)), function(i) {
    p <- as.matrix(permuteDetail[permuteDetail$permutation == i, m])
    all((p - obs) == 0)
})

## Print the summary
summary(permuteDetail[, m])
##        h1         h1-bmp4    h1-mesendoderm     h1-msc        h1-npc   
##  Min.   :0.0   Min.   :0.0   Min.   :0.0    Min.   :0.0   Min.   :0.0  
##  1st Qu.:0.0   1st Qu.:0.0   1st Qu.:0.0    1st Qu.:0.0   1st Qu.:0.0  
##  Median :0.0   Median :0.0   Median :0.0    Median :0.0   Median :0.0  
##  Mean   :0.4   Mean   :0.4   Mean   :0.4    Mean   :0.4   Mean   :0.4  
##  3rd Qu.:1.0   3rd Qu.:1.0   3rd Qu.:1.0    3rd Qu.:1.0   3rd Qu.:1.0  
##  Max.   :2.0   Max.   :2.0   Max.   :2.0    Max.   :2.0   Max.   :2.0

This table shows the summary per group of how many samples were assigned to the group. It can be used for fast detection of anomalies. Also note that 0 permutations out of 100 total permutations resulted in the same grouping as in the original observed data.

Note that in derfinder the re-sampling of the samples is done without replacement. This is done to avoid singular model matrices. While the sample balance is the same across the permutations, what changes are the adjusted variables (including the column medians).

Interactive

The following table shows how the group labels were permuted. This can be useful to detect whether a permutation in particular had too many samples of a group labeled as another group, meaning that the resulting permuted group label resulted in pretty much a name change.

kable(permuteDetail, format = 'html', table.attr='id="permutation_table"')
permutation group h1 h1-bmp4 h1-mesendoderm h1-msc h1-npc
1 h1 1 0 0 1 0
1 h1-bmp4 1 0 0 0 1
1 h1-mesendoderm 1 0 1 0 0
1 h1-msc 1 0 0 1 0
1 h1-npc 1 0 0 0 1
2 h1 1 0 0 1 0
2 h1-bmp4 0 0 0 1 1
2 h1-mesendoderm 0 1 1 0 0
2 h1-msc 1 1 0 0 0
2 h1-npc 0 0 1 0 1
3 h1 0 0 0 2 0
3 h1-bmp4 1 0 0 1 0
3 h1-mesendoderm 1 0 1 0 0
3 h1-msc 0 1 1 0 0
3 h1-npc 0 0 1 1 0
4 h1 0 0 1 1 0
4 h1-bmp4 1 1 0 0 0
4 h1-mesendoderm 1 1 0 0 0
4 h1-msc 0 0 1 0 1
4 h1-npc 1 0 1 0 0
5 h1 0 0 1 0 1
5 h1-bmp4 0 0 0 2 0
5 h1-mesendoderm 1 0 0 0 1
5 h1-msc 0 1 0 1 0
5 h1-npc 0 0 1 1 0
6 h1 0 0 1 1 0
6 h1-bmp4 0 1 0 1 0
6 h1-mesendoderm 0 0 0 2 0
6 h1-msc 1 1 0 0 0
6 h1-npc 0 1 1 0 0
7 h1 0 0 1 1 0
7 h1-bmp4 1 0 0 1 0
7 h1-mesendoderm 0 0 1 1 0
7 h1-msc 1 1 0 0 0
7 h1-npc 0 0 1 0 1
8 h1 0 1 0 1 0
8 h1-bmp4 0 2 0 0 0
8 h1-mesendoderm 0 0 0 2 0
8 h1-msc 1 0 0 1 0
8 h1-npc 1 0 0 0 1
9 h1 0 0 0 1 1
9 h1-bmp4 0 0 1 0 1
9 h1-mesendoderm 0 1 0 1 0
9 h1-msc 1 0 0 0 1
9 h1-npc 1 1 0 0 0
10 h1 0 1 0 1 0
10 h1-bmp4 0 1 0 1 0
10 h1-mesendoderm 0 0 1 1 0
10 h1-msc 0 1 0 0 1
10 h1-npc 0 0 1 0 1
11 h1 0 0 1 0 1
11 h1-bmp4 1 0 0 0 1
11 h1-mesendoderm 0 0 0 2 0
11 h1-msc 0 1 1 0 0
11 h1-npc 0 0 1 0 1
12 h1 1 0 0 0 1
12 h1-bmp4 0 1 0 1 0
12 h1-mesendoderm 1 1 0 0 0
12 h1-msc 1 0 1 0 0
12 h1-npc 0 1 0 0 1
13 h1 0 1 0 1 0
13 h1-bmp4 1 1 0 0 0
13 h1-mesendoderm 0 0 1 0 1
13 h1-msc 0 2 0 0 0
13 h1-npc 0 0 1 0 1
14 h1 1 1 0 0 0
14 h1-bmp4 0 0 0 2 0
14 h1-mesendoderm 0 1 1 0 0
14 h1-msc 1 1 0 0 0
14 h1-npc 0 0 0 1 1
15 h1 0 1 0 1 0
15 h1-bmp4 0 0 1 0 1
15 h1-mesendoderm 0 1 1 0 0
15 h1-msc 1 1 0 0 0
15 h1-npc 0 1 0 1 0
16 h1 0 0 1 0 1
16 h1-bmp4 0 1 0 0 1
16 h1-mesendoderm 0 0 0 1 1
16 h1-msc 0 1 1 0 0
16 h1-npc 0 1 1 0 0
17 h1 0 1 0 1 0
17 h1-bmp4 0 2 0 0 0
17 h1-mesendoderm 1 0 1 0 0
17 h1-msc 0 0 0 2 0
17 h1-npc 0 1 0 0 1
18 h1 0 0 0 1 1
18 h1-bmp4 1 1 0 0 0
18 h1-mesendoderm 0 0 0 0 2
18 h1-msc 0 0 0 2 0
18 h1-npc 1 1 0 0 0
19 h1 1 1 0 0 0
19 h1-bmp4 0 1 0 0 1
19 h1-mesendoderm 0 0 1 1 0
19 h1-msc 0 1 0 0 1
19 h1-npc 0 1 1 0 0
20 h1 1 1 0 0 0
20 h1-bmp4 1 1 0 0 0
20 h1-mesendoderm 1 1 0 0 0
20 h1-msc 0 0 1 1 0
20 h1-npc 0 0 1 1 0
21 h1 0 1 0 0 1
21 h1-bmp4 0 1 0 1 0
21 h1-mesendoderm 0 1 1 0 0
21 h1-msc 0 1 0 0 1
21 h1-npc 1 0 0 0 1
22 h1 0 0 1 1 0
22 h1-bmp4 1 0 1 0 0
22 h1-mesendoderm 0 0 1 1 0
22 h1-msc 0 0 1 1 0
22 h1-npc 1 0 0 0 1
23 h1 0 1 1 0 0
23 h1-bmp4 0 1 1 0 0
23 h1-mesendoderm 0 0 0 1 1
23 h1-msc 1 0 1 0 0
23 h1-npc 0 0 1 0 1
24 h1 1 1 0 0 0
24 h1-bmp4 1 0 0 0 1
24 h1-mesendoderm 0 0 1 0 1
24 h1-msc 0 1 0 1 0
24 h1-npc 0 0 0 0 2
25 h1 0 1 0 0 1
25 h1-bmp4 0 0 2 0 0
25 h1-mesendoderm 0 1 0 1 0
25 h1-msc 1 0 1 0 0
25 h1-npc 0 2 0 0 0
26 h1 1 0 0 0 1
26 h1-bmp4 0 0 1 0 1
26 h1-mesendoderm 0 1 0 0 1
26 h1-msc 0 1 1 0 0
26 h1-npc 0 0 0 1 1
27 h1 0 1 1 0 0
27 h1-bmp4 0 1 0 0 1
27 h1-mesendoderm 0 1 0 1 0
27 h1-msc 1 0 0 1 0
27 h1-npc 1 0 0 1 0
28 h1 0 0 1 1 0
28 h1-bmp4 1 0 0 0 1
28 h1-mesendoderm 0 1 1 0 0
28 h1-msc 0 0 1 0 1
28 h1-npc 0 1 1 0 0
29 h1 0 1 1 0 0
29 h1-bmp4 0 1 0 1 0
29 h1-mesendoderm 1 0 1 0 0
29 h1-msc 0 1 0 1 0
29 h1-npc 1 0 0 1 0
30 h1 0 0 0 0 2
30 h1-bmp4 0 0 1 0 1
30 h1-mesendoderm 0 0 0 1 1
30 h1-msc 1 0 0 1 0
30 h1-npc 2 0 0 0 0
31 h1 1 1 0 0 0
31 h1-bmp4 1 1 0 0 0
31 h1-mesendoderm 0 1 0 0 1
31 h1-msc 1 1 0 0 0
31 h1-npc 1 0 0 0 1
32 h1 0 0 1 1 0
32 h1-bmp4 0 0 1 1 0
32 h1-mesendoderm 1 1 0 0 0
32 h1-msc 0 1 0 1 0
32 h1-npc 0 0 1 1 0
33 h1 0 0 2 0 0
33 h1-bmp4 1 0 0 0 1
33 h1-mesendoderm 0 2 0 0 0
33 h1-msc 0 0 1 1 0
33 h1-npc 1 0 0 1 0
34 h1 0 1 1 0 0
34 h1-bmp4 0 1 1 0 0
34 h1-mesendoderm 0 0 1 1 0
34 h1-msc 0 0 0 0 2
34 h1-npc 1 0 1 0 0
35 h1 0 1 1 0 0
35 h1-bmp4 1 0 0 0 1
35 h1-mesendoderm 1 1 0 0 0
35 h1-msc 0 0 0 1 1
35 h1-npc 0 0 0 1 1
36 h1 1 0 0 1 0
36 h1-bmp4 0 0 1 1 0
36 h1-mesendoderm 1 0 1 0 0
36 h1-msc 1 0 0 0 1
36 h1-npc 0 0 0 0 2
37 h1 0 1 0 1 0
37 h1-bmp4 1 0 0 1 0
37 h1-mesendoderm 0 1 0 0 1
37 h1-msc 1 0 1 0 0
37 h1-npc 1 0 0 0 1
38 h1 0 0 2 0 0
38 h1-bmp4 1 0 0 0 1
38 h1-mesendoderm 1 0 0 1 0
38 h1-msc 0 0 1 0 1
38 h1-npc 0 1 0 0 1
39 h1 0 0 0 2 0
39 h1-bmp4 0 0 2 0 0
39 h1-mesendoderm 2 0 0 0 0
39 h1-msc 1 0 0 1 0
39 h1-npc 0 1 1 0 0
40 h1 0 0 2 0 0
40 h1-bmp4 0 0 1 1 0
40 h1-mesendoderm 0 0 0 0 2
40 h1-msc 0 1 1 0 0
40 h1-npc 2 0 0 0 0
41 h1 0 0 0 1 1
41 h1-bmp4 0 1 1 0 0
41 h1-mesendoderm 0 0 0 1 1
41 h1-msc 1 0 0 0 1
41 h1-npc 0 1 1 0 0
42 h1 0 0 1 0 1
42 h1-bmp4 0 1 1 0 0
42 h1-mesendoderm 1 0 0 0 1
42 h1-msc 1 0 0 0 1
42 h1-npc 1 1 0 0 0
43 h1 0 0 0 0 2
43 h1-bmp4 1 0 1 0 0
43 h1-mesendoderm 0 1 1 0 0
43 h1-msc 1 1 0 0 0
43 h1-npc 1 1 0 0 0
44 h1 0 1 0 0 1
44 h1-bmp4 0 0 0 2 0
44 h1-mesendoderm 0 1 0 1 0
44 h1-msc 0 1 1 0 0
44 h1-npc 0 1 0 1 0
45 h1 1 1 0 0 0
45 h1-bmp4 1 0 0 0 1
45 h1-mesendoderm 0 1 0 0 1
45 h1-msc 1 0 0 0 1
45 h1-npc 1 0 0 1 0
46 h1 0 1 0 1 0
46 h1-bmp4 1 1 0 0 0
46 h1-mesendoderm 1 0 1 0 0
46 h1-msc 1 0 0 0 1
46 h1-npc 2 0 0 0 0
47 h1 1 0 0 1 0
47 h1-bmp4 0 1 0 0 1
47 h1-mesendoderm 0 0 0 0 2
47 h1-msc 0 0 1 0 1
47 h1-npc 0 2 0 0 0
48 h1 0 1 0 0 1
48 h1-bmp4 1 0 1 0 0
48 h1-mesendoderm 1 0 0 0 1
48 h1-msc 0 1 0 1 0
48 h1-npc 0 0 1 1 0
49 h1 0 0 1 0 1
49 h1-bmp4 1 0 1 0 0
49 h1-mesendoderm 0 0 1 1 0
49 h1-msc 0 1 1 0 0
49 h1-npc 0 1 0 0 1
50 h1 0 0 1 1 0
50 h1-bmp4 1 1 0 0 0
50 h1-mesendoderm 1 1 0 0 0
50 h1-msc 1 0 0 1 0
50 h1-npc 0 0 0 2 0
51 h1 0 1 0 1 0
51 h1-bmp4 0 1 0 1 0
51 h1-mesendoderm 1 0 1 0 0
51 h1-msc 0 0 1 1 0
51 h1-npc 0 1 0 1 0
52 h1 0 1 1 0 0
52 h1-bmp4 0 1 0 0 1
52 h1-mesendoderm 0 0 2 0 0
52 h1-msc 0 1 1 0 0
52 h1-npc 0 0 0 1 1
53 h1 1 0 0 1 0
53 h1-bmp4 0 1 0 0 1
53 h1-mesendoderm 0 0 0 1 1
53 h1-msc 0 0 0 1 1
53 h1-npc 0 1 1 0 0
54 h1 0 0 1 1 0
54 h1-bmp4 0 0 1 0 1
54 h1-mesendoderm 1 0 0 0 1
54 h1-msc 0 1 0 1 0
54 h1-npc 1 0 0 0 1
55 h1 1 0 0 0 1
55 h1-bmp4 1 0 0 1 0
55 h1-mesendoderm 1 0 0 1 0
55 h1-msc 0 1 0 0 1
55 h1-npc 0 1 0 0 1
56 h1 1 1 0 0 0
56 h1-bmp4 1 1 0 0 0
56 h1-mesendoderm 1 1 0 0 0
56 h1-msc 0 0 1 0 1
56 h1-npc 1 0 0 1 0
57 h1 0 0 1 0 1
57 h1-bmp4 0 0 1 0 1
57 h1-mesendoderm 0 1 0 0 1
57 h1-msc 0 0 0 0 2
57 h1-npc 1 1 0 0 0
58 h1 0 0 0 1 1
58 h1-bmp4 0 0 1 1 0
58 h1-mesendoderm 0 1 1 0 0
58 h1-msc 0 2 0 0 0
58 h1-npc 0 0 0 2 0
59 h1 0 1 0 0 1
59 h1-bmp4 0 1 0 1 0
59 h1-mesendoderm 0 2 0 0 0
59 h1-msc 0 1 0 0 1
59 h1-npc 1 0 0 1 0
60 h1 0 0 0 1 1
60 h1-bmp4 0 1 1 0 0
60 h1-mesendoderm 1 0 0 1 0
60 h1-msc 1 1 0 0 0
60 h1-npc 0 1 0 0 1
61 h1 0 1 1 0 0
61 h1-bmp4 0 0 1 0 1
61 h1-mesendoderm 0 0 0 1 1
61 h1-msc 0 1 0 1 0
61 h1-npc 0 0 1 1 0
62 h1 0 2 0 0 0
62 h1-bmp4 1 0 0 0 1
62 h1-mesendoderm 0 0 0 1 1
62 h1-msc 0 1 0 0 1
62 h1-npc 0 0 0 2 0
63 h1 1 1 0 0 0
63 h1-bmp4 0 0 0 1 1
63 h1-mesendoderm 1 1 0 0 0
63 h1-msc 0 0 0 0 2
63 h1-npc 0 0 0 1 1
64 h1 0 0 1 1 0
64 h1-bmp4 0 1 1 0 0
64 h1-mesendoderm 1 0 0 1 0
64 h1-msc 1 0 0 0 1
64 h1-npc 0 0 1 1 0
65 h1 1 0 0 1 0
65 h1-bmp4 1 1 0 0 0
65 h1-mesendoderm 0 0 1 1 0
65 h1-msc 0 0 1 1 0
65 h1-npc 1 0 0 0 1
66 h1 0 1 0 0 1
66 h1-bmp4 0 0 1 1 0
66 h1-mesendoderm 1 1 0 0 0
66 h1-msc 0 0 0 1 1
66 h1-npc 0 0 1 1 0
67 h1 1 0 0 0 1
67 h1-bmp4 0 0 2 0 0
67 h1-mesendoderm 1 1 0 0 0
67 h1-msc 0 0 1 0 1
67 h1-npc 0 0 1 1 0
68 h1 0 0 1 0 1
68 h1-bmp4 0 0 0 1 1
68 h1-mesendoderm 0 1 1 0 0
68 h1-msc 1 1 0 0 0
68 h1-npc 1 0 0 0 1
69 h1 0 1 0 1 0
69 h1-bmp4 0 1 0 0 1
69 h1-mesendoderm 0 1 0 0 1
69 h1-msc 0 0 1 1 0
69 h1-npc 0 0 2 0 0
70 h1 1 1 0 0 0
70 h1-bmp4 0 0 0 1 1
70 h1-mesendoderm 0 1 0 0 1
70 h1-msc 0 0 1 0 1
70 h1-npc 0 1 0 0 1
71 h1 0 0 1 1 0
71 h1-bmp4 0 0 1 1 0
71 h1-mesendoderm 0 1 1 0 0
71 h1-msc 1 0 0 0 1
71 h1-npc 1 1 0 0 0
72 h1 1 0 0 1 0
72 h1-bmp4 1 0 0 0 1
72 h1-mesendoderm 0 0 0 2 0
72 h1-msc 1 0 0 0 1
72 h1-npc 1 0 1 0 0
73 h1 1 0 0 0 1
73 h1-bmp4 0 0 1 1 0
73 h1-mesendoderm 1 0 1 0 0
73 h1-msc 0 0 1 0 1
73 h1-npc 0 1 0 0 1
74 h1 0 0 0 1 1
74 h1-bmp4 0 1 0 0 1
74 h1-mesendoderm 0 1 0 1 0
74 h1-msc 1 0 1 0 0
74 h1-npc 0 1 0 1 0
75 h1 0 0 1 0 1
75 h1-bmp4 0 1 1 0 0
75 h1-mesendoderm 0 0 0 0 2
75 h1-msc 1 0 1 0 0
75 h1-npc 1 0 1 0 0
76 h1 0 0 0 1 1
76 h1-bmp4 0 0 1 1 0
76 h1-mesendoderm 0 0 0 1 1
76 h1-msc 1 0 0 1 0
76 h1-npc 1 1 0 0 0
77 h1 1 0 0 0 1
77 h1-bmp4 1 0 0 1 0
77 h1-mesendoderm 0 0 1 1 0
77 h1-msc 1 1 0 0 0
77 h1-npc 0 0 2 0 0
78 h1 1 1 0 0 0
78 h1-bmp4 0 1 0 1 0
78 h1-mesendoderm 0 0 1 1 0
78 h1-msc 2 0 0 0 0
78 h1-npc 0 0 1 0 1
79 h1 0 0 1 0 1
79 h1-bmp4 1 0 0 0 1
79 h1-mesendoderm 0 0 0 0 2
79 h1-msc 1 0 1 0 0
79 h1-npc 0 0 0 0 2
80 h1 0 0 0 1 1
80 h1-bmp4 1 0 0 0 1
80 h1-mesendoderm 0 0 2 0 0
80 h1-msc 0 0 0 1 1
80 h1-npc 0 0 1 0 1
81 h1 1 0 1 0 0
81 h1-bmp4 1 0 0 1 0
81 h1-mesendoderm 1 1 0 0 0
81 h1-msc 0 0 2 0 0
81 h1-npc 0 1 0 1 0
82 h1 1 0 0 0 1
82 h1-bmp4 0 1 0 1 0
82 h1-mesendoderm 1 1 0 0 0
82 h1-msc 0 0 1 1 0
82 h1-npc 0 1 1 0 0
83 h1 1 0 1 0 0
83 h1-bmp4 0 1 0 0 1
83 h1-mesendoderm 0 0 0 1 1
83 h1-msc 0 0 0 2 0
83 h1-npc 1 1 0 0 0
84 h1 1 0 0 0 1
84 h1-bmp4 0 0 1 0 1
84 h1-mesendoderm 0 0 1 0 1
84 h1-msc 1 0 0 1 0
84 h1-npc 1 1 0 0 0
85 h1 0 0 1 1 0
85 h1-bmp4 0 1 0 0 1
85 h1-mesendoderm 1 0 1 0 0
85 h1-msc 0 1 0 0 1
85 h1-npc 0 0 1 0 1
86 h1 1 0 1 0 0
86 h1-bmp4 1 0 0 0 1
86 h1-mesendoderm 0 0 1 0 1
86 h1-msc 0 0 1 1 0
86 h1-npc 0 1 0 0 1
87 h1 0 1 0 0 1
87 h1-bmp4 1 0 0 1 0
87 h1-mesendoderm 1 0 1 0 0
87 h1-msc 0 1 0 1 0
87 h1-npc 1 0 0 0 1
88 h1 2 0 0 0 0
88 h1-bmp4 0 0 1 1 0
88 h1-mesendoderm 1 0 0 0 1
88 h1-msc 0 0 1 0 1
88 h1-npc 0 1 0 1 0
89 h1 2 0 0 0 0
89 h1-bmp4 1 0 0 1 0
89 h1-mesendoderm 1 0 0 0 1
89 h1-msc 1 0 0 0 1
89 h1-npc 0 0 0 1 1
90 h1 1 0 1 0 0
90 h1-bmp4 1 0 1 0 0
90 h1-mesendoderm 1 0 1 0 0
90 h1-msc 0 1 1 0 0
90 h1-npc 0 1 1 0 0
91 h1 1 0 0 0 1
91 h1-bmp4 0 0 1 0 1
91 h1-mesendoderm 1 0 0 0 1
91 h1-msc 0 0 0 1 1
91 h1-npc 0 0 1 1 0
92 h1 0 1 0 0 1
92 h1-bmp4 1 0 1 0 0
92 h1-mesendoderm 0 0 0 0 2
92 h1-msc 0 0 0 1 1
92 h1-npc 1 1 0 0 0
93 h1 0 1 0 0 1
93 h1-bmp4 0 0 1 1 0
93 h1-mesendoderm 1 0 0 1 0
93 h1-msc 2 0 0 0 0
93 h1-npc 1 0 0 1 0
94 h1 1 0 0 0 1
94 h1-bmp4 2 0 0 0 0
94 h1-mesendoderm 1 0 0 0 1
94 h1-msc 0 0 1 1 0
94 h1-npc 0 1 1 0 0
95 h1 1 0 0 1 0
95 h1-bmp4 0 1 0 1 0
95 h1-mesendoderm 0 0 1 1 0
95 h1-msc 0 0 1 1 0
95 h1-npc 1 0 1 0 0
96 h1 0 1 1 0 0
96 h1-bmp4 1 0 0 0 1
96 h1-mesendoderm 0 1 1 0 0
96 h1-msc 0 1 0 1 0
96 h1-npc 0 0 1 1 0
97 h1 1 0 1 0 0
97 h1-bmp4 0 0 1 0 1
97 h1-mesendoderm 1 0 0 1 0
97 h1-msc 0 1 1 0 0
97 h1-npc 0 0 0 2 0
98 h1 1 1 0 0 0
98 h1-bmp4 0 0 1 0 1
98 h1-mesendoderm 1 1 0 0 0
98 h1-msc 0 0 1 0 1
98 h1-npc 1 0 1 0 0
99 h1 1 0 1 0 0
99 h1-bmp4 1 0 0 1 0
99 h1-mesendoderm 0 0 1 1 0
99 h1-msc 0 0 1 1 0
99 h1-npc 1 0 0 1 0
100 h1 1 1 0 0 0
100 h1-bmp4 0 0 0 1 1
100 h1-mesendoderm 0 1 0 1 0
100 h1-msc 1 0 0 0 1
100 h1-npc 0 1 0 1 0

Reproducibility

General information

The F-statistic cutoff used was 0.005 and type of cutoff used was theoretical. Furthermore, the maximum region (data) gap was set to and the maximum cluster gap was set to 3000.

Details

This analysis was on each chromosome was performed with the following call to analyzeChr() (shown for one chromosome only):

## analyzeChr(chr = opt$chr, coverageInfo = covData, models = models, 
##     cutoffFstat = 0.005, nPermute = 100, seeds = seq_len(100) + 
##         20131212, groupInfo = groupInfo, lowMemDir = file.path(tempdir(), 
##         opt$chr, "chunksDir"), colsubset = colsubset, adjustF = 1, 
##     maxClusterGap = 3000, mc.cores = opt$mcores)

The results were merged using the following call to mergeResults():

## mergeResults(prefix = "run4-v1.0.10", genomicState = GenomicState.Hsapiens.UCSC.hg19.knownGene[["fullGenome"]], 
##     optionsStats = optionsStats)

This report was generated in path /dcs01/ajaffe/Brain/derRuns/derSoftware/stem/derAnalysis using the following call to derfinderReport():

## derfinderReport(prefix = "run4-v1.0.10", browse = FALSE, nBestClusters = 20, 
##     fullCov = fullCov, device = "CairoPNG")

Date the report was generated.

## [1] "2014-11-24 17:02:34 EST"

Wallclock time spent generating the report.

## Time difference of 9.443 mins

R session information.

## Session info-----------------------------------------------------------------------------------------------------------
##  setting  value                                      
##  version  R version 3.1.1 Patched (2014-10-16 r66782)
##  system   x86_64, linux-gnu                          
##  ui       X11                                        
##  language (EN)                                       
##  collate  en_US.UTF-8                                
##  tz       
## Packages---------------------------------------------------------------------------------------------------------------
##  package                           * version  date       source                                      
##  acepack                             1.3.3.3  2013-05-03 CRAN (R 3.1.1)                              
##  AnnotationDbi                     * 1.28.1   2014-10-29 Bioconductor                                
##  base64enc                           0.1.2    2014-06-26 CRAN (R 3.1.0)                              
##  BatchJobs                           1.5      2014-10-30 CRAN (R 3.1.1)                              
##  BBmisc                              1.8      2014-10-30 CRAN (R 3.1.1)                              
##  bibtex                              0.3.6    2013-07-29 CRAN (R 3.1.1)                              
##  Biobase                           * 2.26.0   2014-10-15 Bioconductor                                
##  BiocGenerics                      * 0.12.1   2014-11-15 Bioconductor                                
##  BiocParallel                        1.0.0    2014-10-15 Bioconductor                                
##  biomaRt                             2.22.0   2014-10-15 Bioconductor                                
##  Biostrings                          2.34.0   2014-10-15 Bioconductor                                
##  biovizBase                        * 1.14.0   2014-10-15 Bioconductor                                
##  bitops                              1.0.6    2013-08-17 CRAN (R 3.1.0)                              
##  brew                                1.0.6    2011-04-13 CRAN (R 3.1.0)                              
##  BSgenome                            1.34.0   2014-10-15 Bioconductor                                
##  bumphunter                          1.6.0    2014-10-15 Bioconductor                                
##  Cairo                               1.5.6    2014-06-26 CRAN (R 3.1.0)                              
##  checkmate                           1.5.0    2014-10-19 CRAN (R 3.1.1)                              
##  cluster                             1.15.3   2014-09-04 CRAN (R 3.1.1)                              
##  codetools                           0.2.9    2014-08-21 CRAN (R 3.1.1)                              
##  colorspace                          1.2.4    2013-09-30 CRAN (R 3.1.0)                              
##  DBI                                 0.3.1    2014-09-24 CRAN (R 3.1.1)                              
##  derfinder                         * 1.0.10   2014-11-23 Bioconductor                                
##  derfinderHelper                     1.0.4    2014-11-05 Github (lcolladotor/derfinderHelper@27bcfe6)
##  derfinderPlot                       1.0.3    2014-11-05 Github (lcolladotor/derfinderPlot@8d076e3)  
##  devtools                            1.6.1    2014-10-07 CRAN (R 3.1.1)                              
##  dichromat                           2.0.0    2013-01-24 CRAN (R 3.1.0)                              
##  digest                              0.6.4    2013-12-03 CRAN (R 3.1.0)                              
##  doRNG                               1.6      2014-03-07 CRAN (R 3.1.0)                              
##  evaluate                            0.5.5    2014-04-29 CRAN (R 3.1.0)                              
##  fail                                1.2      2013-09-19 CRAN (R 3.1.0)                              
##  foreach                             1.4.2    2014-04-11 CRAN (R 3.1.0)                              
##  foreign                             0.8.61   2014-03-28 CRAN (R 3.1.1)                              
##  formatR                             1.0      2014-08-25 CRAN (R 3.1.1)                              
##  Formula                             1.1.2    2014-07-13 CRAN (R 3.1.1)                              
##  GenomeInfoDb                      * 1.2.3    2014-11-15 Bioconductor                                
##  GenomicAlignments                   1.2.1    2014-11-05 Bioconductor                                
##  GenomicFeatures                   * 1.18.2   2014-10-29 Bioconductor                                
##  GenomicFiles                        1.2.0    2014-10-15 Bioconductor                                
##  GenomicRanges                     * 1.18.3   2014-11-20 Bioconductor                                
##  GGally                              0.4.8    2014-08-26 CRAN (R 3.1.1)                              
##  ggbio                               1.14.0   2014-11-04 Bioconductor                                
##  ggplot2                           * 1.0.0    2014-05-21 CRAN (R 3.1.0)                              
##  graph                               1.44.0   2014-10-15 Bioconductor                                
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##  gtable                              0.1.2    2012-12-05 CRAN (R 3.1.0)                              
##  highr                               0.4      2014-10-23 CRAN (R 3.1.1)                              
##  Hmisc                               3.14.6   2014-11-22 CRAN (R 3.1.1)                              
##  htmltools                           0.2.6    2014-09-08 CRAN (R 3.1.1)                              
##  httr                                0.5      2014-09-02 CRAN (R 3.1.1)                              
##  IRanges                           * 2.0.0    2014-10-15 Bioconductor                                
##  iterators                           1.0.7    2014-04-11 CRAN (R 3.1.0)                              
##  knitcitations                       1.0.4    2014-11-05 Github (cboettig/knitcitations@508de74)     
##  knitr                             * 1.8      2014-11-11 CRAN (R 3.1.1)                              
##  knitrBootstrap                      1.0.0    2014-11-19 Github (jimhester/knitrBootstrap@76c41f0)   
##  labeling                            0.3      2014-08-23 CRAN (R 3.1.1)                              
##  lattice                             0.20.29  2014-04-04 CRAN (R 3.1.1)                              
##  latticeExtra                        0.6.26   2013-08-15 CRAN (R 3.1.0)                              
##  locfit                              1.5.9.1  2013-04-20 CRAN (R 3.1.0)                              
##  lubridate                           1.3.3    2013-12-31 CRAN (R 3.1.1)                              
##  markdown                            0.7.4    2014-08-24 CRAN (R 3.1.1)                              
##  MASS                                7.3.35   2014-09-30 CRAN (R 3.1.1)                              
##  Matrix                              1.1.4    2014-06-15 CRAN (R 3.1.1)                              
##  matrixStats                         0.10.3   2014-10-15 CRAN (R 3.1.1)                              
##  memoise                             0.2.1    2014-04-22 CRAN (R 3.1.0)                              
##  mgcv                              * 1.8.3    2014-08-29 CRAN (R 3.1.1)                              
##  mime                                0.2      2014-09-26 CRAN (R 3.1.1)                              
##  munsell                             0.4.2    2013-07-11 CRAN (R 3.1.0)                              
##  nlme                              * 3.1.118  2014-10-07 CRAN (R 3.1.1)                              
##  nnet                                7.3.8    2014-03-28 CRAN (R 3.1.1)                              
##  OrganismDbi                         1.8.0    2014-10-15 Bioconductor                                
##  pkgmaker                            0.22     2014-05-14 CRAN (R 3.1.0)                              
##  plyr                                1.8.1    2014-02-26 CRAN (R 3.1.0)                              
##  proto                               0.3.10   2012-12-22 CRAN (R 3.1.0)                              
##  qvalue                              1.40.0   2014-10-15 Bioconductor                                
##  RBGL                                1.42.0   2014-10-15 Bioconductor                                
##  RColorBrewer                      * 1.0.5    2011-06-17 CRAN (R 3.1.0)                              
##  Rcpp                                0.11.3   2014-09-29 CRAN (R 3.1.1)                              
##  RCurl                               1.95.4.3 2014-07-29 CRAN (R 3.1.1)                              
##  RefManageR                          0.8.40   2014-10-29 CRAN (R 3.1.1)                              
##  regionReport                      * 1.0.4    2014-11-24 Github (lcolladotor/regionReport@ba61191)   
##  registry                            0.2      2012-01-24 CRAN (R 3.1.0)                              
##  reshape                             0.8.5    2014-04-23 CRAN (R 3.1.0)                              
##  reshape2                            1.4      2014-04-23 CRAN (R 3.1.0)                              
##  RJSONIO                             1.3.0    2014-07-28 CRAN (R 3.1.1)                              
##  rmarkdown                           0.3.3    2014-09-17 CRAN (R 3.1.1)                              
##  R.methodsS3                         1.6.1    2014-01-05 CRAN (R 3.1.0)                              
##  rngtools                            1.2.4    2014-03-06 CRAN (R 3.1.0)                              
##  rpart                               4.1.8    2014-03-28 CRAN (R 3.1.1)                              
##  Rsamtools                           1.18.2   2014-11-12 Bioconductor                                
##  RSQLite                             1.0.0    2014-10-25 CRAN (R 3.1.1)                              
##  rstudioapi                          0.1      2014-03-27 CRAN (R 3.1.1)                              
##  rtracklayer                         1.26.2   2014-11-12 Bioconductor                                
##  S4Vectors                         * 0.4.0    2014-10-15 Bioconductor                                
##  scales                              0.2.4    2014-04-22 CRAN (R 3.1.0)                              
##  sendmailR                           1.2.1    2014-09-21 CRAN (R 3.1.1)                              
##  stringr                             0.6.2    2012-12-06 CRAN (R 3.1.0)                              
##  survival                            2.37.7   2014-01-22 CRAN (R 3.1.1)                              
##  TxDb.Hsapiens.UCSC.hg19.knownGene * 3.0.0    2014-09-29 Bioconductor                                
##  VariantAnnotation                   1.12.4   2014-11-16 Bioconductor                                
##  XML                                 3.98.1.1 2013-06-20 CRAN (R 3.1.0)                              
##  xtable                              1.7.4    2014-09-12 CRAN (R 3.1.1)                              
##  XVector                           * 0.6.0    2014-10-15 Bioconductor                                
##  yaml                                2.1.13   2014-06-12 CRAN (R 3.1.1)                              
##  zlibbioc                            1.12.0   2014-10-15 Bioconductor

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This report was created with regionReport (Collado-Torres, Jaffe, and Leek, 2014) using knitrBootstrap (Hester, 2014) to format the html while knitr (Xie, 2014) and rmarkdown (Allaire, McPherson, Xie, Wickham, et al., 2014) were running behind the scenes.

Citations made with knitcitations (Boettiger, 2014).

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[4] L. Collado-Torres, A. E. Jaffe and J. T. Leek. regionReport: Generate HTML reports for exploring a set of regions. https://github.com/lcolladotor/regionReport - R package version 1.0.4. 2014. URL: http://www.bioconductor.org/packages/release/bioc/html/regionReport.html.

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